14UU | pdb_000014uu

Crystal Structure of FtsZ with F6616-3157


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-185VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6253.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.675α = 90
b = 88.675β = 90
c = 179.161γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-185ftsz-185x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-185SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1851.99244.3381000.2190.2280.0630.9979.413.354286
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1851.9922.0271002.0982.1820.5960.34813.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.99244.37754285272999.980.1810.17920.18730.21810.224231.353
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0010.001-0.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.67
r_dihedral_angle_6_deg14.4
r_lrange_it9.304
r_lrange_other9.077
r_dihedral_angle_2_deg9.004
r_scangle_it7.385
r_scangle_other7.384
r_dihedral_angle_1_deg6.517
r_scbond_it4.713
r_scbond_other4.713
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.67
r_dihedral_angle_6_deg14.4
r_lrange_it9.304
r_lrange_other9.077
r_dihedral_angle_2_deg9.004
r_scangle_it7.385
r_scangle_other7.384
r_dihedral_angle_1_deg6.517
r_scbond_it4.713
r_scbond_other4.713
r_mcangle_it4.329
r_mcangle_other4.329
r_mcbond_other2.918
r_mcbond_it2.898
r_angle_refined_deg1.755
r_angle_other_deg0.589
r_symmetry_xyhbond_nbd_refined0.268
r_symmetry_nbd_refined0.22
r_nbd_refined0.213
r_xyhbond_nbd_refined0.208
r_nbd_other0.197
r_symmetry_nbd_other0.191
r_nbtor_refined0.168
r_symmetry_nbtor_other0.084
r_chiral_restr0.083
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms308
Heterogen Atoms31

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction