14UT | pdb_000014ut

Crystal Structure of FtsZ with F1906-0090


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-174VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6453.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.671α = 90
b = 88.671β = 90
c = 180.323γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-174ftsz-174x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-174SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1742.26843.0531000.310.3220.0880.9936.513.437098
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1742.2682.3071002.2672.3580.6460.4113.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.26843.0937083195499.9330.1880.18520.19070.23350.235937.411
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.0050.01-0.034
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.068
r_dihedral_angle_6_deg13.261
r_lrange_it8.771
r_lrange_other8.681
r_scangle_it6.568
r_scangle_other6.567
r_dihedral_angle_1_deg6.556
r_dihedral_angle_2_deg6.495
r_mcangle_other4.458
r_mcangle_it4.457
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.068
r_dihedral_angle_6_deg13.261
r_lrange_it8.771
r_lrange_other8.681
r_scangle_it6.568
r_scangle_other6.567
r_dihedral_angle_1_deg6.556
r_dihedral_angle_2_deg6.495
r_mcangle_other4.458
r_mcangle_it4.457
r_scbond_it4.151
r_scbond_other4.15
r_mcbond_it2.868
r_mcbond_other2.863
r_angle_refined_deg1.58
r_angle_other_deg0.584
r_symmetry_nbd_other0.445
r_nbd_refined0.221
r_nbd_other0.221
r_symmetry_xyhbond_nbd_refined0.218
r_xyhbond_nbd_refined0.213
r_symmetry_nbd_refined0.205
r_nbtor_refined0.17
r_symmetry_nbtor_other0.109
r_symmetry_xyhbond_nbd_other0.089
r_chiral_restr0.075
r_chiral_restr_other0.021
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms306
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction