14UR | pdb_000014ur

Crystal Structure of FtsZ with F9995-1720


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-158VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.652.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.445α = 90
b = 88.445β = 90
c = 178.652γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-158ftsz-158x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-158SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1582.08644.22297.50.2350.2440.0680.9979.31345733
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1582.0862.1221002.0782.1710.6230.39612.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.08644.26245719235097.4260.1820.18020.18780.21650.223135.186
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.010.02-0.066
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.925
r_dihedral_angle_6_deg14.204
r_lrange_it8.617
r_lrange_other8.555
r_dihedral_angle_2_deg7.99
r_scangle_it7.258
r_scangle_other7.257
r_dihedral_angle_1_deg6.451
r_scbond_it4.657
r_scbond_other4.656
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.925
r_dihedral_angle_6_deg14.204
r_lrange_it8.617
r_lrange_other8.555
r_dihedral_angle_2_deg7.99
r_scangle_it7.258
r_scangle_other7.257
r_dihedral_angle_1_deg6.451
r_scbond_it4.657
r_scbond_other4.656
r_mcangle_it4.251
r_mcangle_other4.251
r_dihedral_angle_other_2_deg3.372
r_mcbond_it2.865
r_mcbond_other2.865
r_angle_refined_deg1.66
r_angle_other_deg0.618
r_symmetry_nbd_other0.453
r_nbd_refined0.216
r_nbd_other0.206
r_symmetry_xyhbond_nbd_refined0.201
r_symmetry_nbd_refined0.197
r_xyhbond_nbd_refined0.173
r_nbtor_refined0.169
r_symmetry_nbtor_other0.126
r_symmetry_xyhbond_nbd_other0.096
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction