14UN | pdb_000014un

Crystal Structure of FtsZ with F1902-0062


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-131VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6252.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.688α = 90
b = 88.688β = 90
c = 178.708γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-131ftsz-131x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-131SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1311.92844.3441000.1980.2060.0560.9989.913.459771
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1311.9281.9611002.4992.5980.7080.37313.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.92844.38359764302999.9510.1820.18060.18820.21270.218634.061
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.001-0.001-0.0010.004
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.29
r_dihedral_angle_6_deg14.399
r_dihedral_angle_other_2_deg11.621
r_lrange_it8.748
r_lrange_other8.725
r_dihedral_angle_2_deg8.482
r_scangle_it7.485
r_scangle_other7.484
r_dihedral_angle_1_deg6.832
r_scbond_it4.877
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.29
r_dihedral_angle_6_deg14.399
r_dihedral_angle_other_2_deg11.621
r_lrange_it8.748
r_lrange_other8.725
r_dihedral_angle_2_deg8.482
r_scangle_it7.485
r_scangle_other7.484
r_dihedral_angle_1_deg6.832
r_scbond_it4.877
r_scbond_other4.866
r_mcangle_it4.324
r_mcangle_other4.324
r_mcbond_it2.959
r_mcbond_other2.958
r_angle_refined_deg1.737
r_angle_other_deg0.647
r_symmetry_nbd_other0.494
r_symmetry_xyhbond_nbd_other0.382
r_symmetry_xyhbond_nbd_refined0.26
r_nbd_refined0.222
r_nbd_other0.202
r_symmetry_nbd_refined0.201
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.166
r_symmetry_nbtor_other0.119
r_chiral_restr0.082
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction