14UH | pdb_000014uh

Crystal Structure of FtsZ with F2167-0233


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Q1Xinitial MR model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
ftsz-100VAPOR DIFFUSION, SITTING DROP52940.1 M ammonium sulfate, 15.6% (w/v) PEG 3350, 0.1 M Bis-Tris pH 5.0.
Crystal Properties
Matthews coefficientSolvent content
2.6553.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 88.899α = 90
b = 88.899β = 90
c = 180.272γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
ftsz-100ftsz-100x-ray100PIXELDECTRIS EIGER X 9MKB2025-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
ftsz-100SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.919764NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
ftsz-1002.29343.15798.70.2560.2670.0730.9957.913.135622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
ftsz-1002.2932.3321001.8231.8970.5190.42613.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Work (Depositor)R-Work (DCC)R-Free (Depositor)R-Free (DCC)Mean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.29343.19435611186198.6670.1780.17530.18040.22360.225342.367
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0090.0040.009-0.029
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.189
r_dihedral_angle_6_deg15.116
r_lrange_it10.674
r_lrange_other10.636
r_scangle_it9.043
r_scangle_other9.041
r_dihedral_angle_2_deg7.677
r_dihedral_angle_1_deg6.588
r_mcangle_it6.109
r_mcangle_other6.109
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.189
r_dihedral_angle_6_deg15.116
r_lrange_it10.674
r_lrange_other10.636
r_scangle_it9.043
r_scangle_other9.041
r_dihedral_angle_2_deg7.677
r_dihedral_angle_1_deg6.588
r_mcangle_it6.109
r_mcangle_other6.109
r_scbond_it5.924
r_scbond_other5.923
r_mcbond_it4.103
r_mcbond_other4.103
r_angle_refined_deg1.757
r_angle_other_deg0.626
r_symmetry_nbd_other0.462
r_nbd_refined0.221
r_symmetry_xyhbond_nbd_refined0.208
r_xyhbond_nbd_refined0.194
r_nbd_other0.181
r_nbtor_refined0.17
r_symmetry_nbd_refined0.151
r_symmetry_nbtor_other0.112
r_chiral_restr0.082
r_chiral_restr_other0.023
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4230
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
XDSdata reduction
DIMPLEphasing
PHASERphasing
Cootmodel building
gemmidata extraction