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 12TW | pdb_000012tw

M6 bound to A-BVP1 dimer of GII.4 Syd VLP from 5 fold axis


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d6.936
f_angle_d0.579
f_chiral_restr0.045
f_plane_restr0.004
f_bond_d0.002
Sample
Norovirus
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles104100
Reported Resolution (Å)3.39
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification130000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARCv4.7.0
MODEL REFINEMENTPHENIX2.0_5824
IMAGE ACQUISITIONEPU3.14
CTF CORRECTIONcryoSPARCv4.7.0
INITIAL EULER ASSIGNMENTcryoSPARCv4.7.0
FINAL EULER ASSIGNMENTcryoSPARCv4.7.0
RECONSTRUCTIONcryoSPARCv4.7.0
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE