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Crystal structure of 6-fluoropyrazolo[1,5-a]pyridine derivative bound to KIT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other proprietary
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.75 293 PEG 6K, BICINE
Crystal Properties Matthews coefficient Solvent content 2.18 43.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.338 α = 90 b = 78.537 β = 90 c = 94.494 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2023-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.8856 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.629 60.399 100 0.1103 0.1188 0.0433 0.996 8.07 7.63 10528
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.629 2.675 100 2.0175 2.1642 0.7736 0.288 1.27 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.629 60.399 10519 514 99.915 0.25 0.2462 0.2492 0.3202 0.3179 75.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.128 1.386 -0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.057 r_dihedral_angle_other_6_deg 22.791 r_dihedral_angle_4_deg 16.583 r_dihedral_angle_3_deg 14.34 r_dihedral_angle_6_deg 10.04 r_lrange_it 8.079 r_lrange_other 8.078 r_dihedral_angle_1_deg 6.557 r_mcangle_it 5.727 r_mcangle_other 5.725
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.057 r_dihedral_angle_other_6_deg 22.791 r_dihedral_angle_4_deg 16.583 r_dihedral_angle_3_deg 14.34 r_dihedral_angle_6_deg 10.04 r_lrange_it 8.079 r_lrange_other 8.078 r_dihedral_angle_1_deg 6.557 r_mcangle_it 5.727 r_mcangle_other 5.725 r_scangle_it 5.035 r_scangle_other 5.034 r_mcbond_it 3.577 r_mcbond_other 3.576 r_scbond_it 3.056 r_scbond_other 3.054 r_angle_refined_deg 1.319 r_angle_other_deg 1.104 r_nbd_refined 0.156 r_nbtor_refined 0.151 r_symmetry_nbd_other 0.146 r_nbd_other 0.133 r_xyhbond_nbd_refined 0.091 r_symmetry_xyhbond_nbd_refined 0.077 r_symmetry_nbtor_other 0.072 r_symmetry_nbd_refined 0.056 r_chiral_restr 0.048 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2477 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 29
Software Software Software Name Purpose autoPROC data processing Aimless data scaling TRUNCATE data processing REFMAC refinement XDS data reduction REFMAC phasing