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CCL11 liquid-state NMR structure with fast and intermediate time scale dynamics
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 600 2 2D 1H-15N HSQC 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 600 3 3D CBCA(CO)NH 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 4 3D HNCACB 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 5 3D C(CO)NH 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 16 3D HBHA(CO)NH 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 15 3D HCCH-TOCSY 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 14 3D H(CCO)NH 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 13 3D 1H-13C NOESY aliphatic 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 12 3D 1H-13C NOESY aromatic 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 10 3D 1H-15N NOESY 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE NEO 1100 18 2D CBHD 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 17 2D CBHDHE 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 19 2D 1H-13C CT-HSQC aromatic 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 20 2D 1H-13C HSQC aromatic 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800 21 3D HCCH-TOCSY aromatic 2.15 mM [U-100% 13C; U-100% 15N] CCL11/Eotaxin 95% H2O/5% D2O 100 mM 5.0 1 atm 303.15 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 800 3 Bruker AVANCE NEO 1100
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 300 Conformers Submitted Total Number 30 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH 3.9 Schwieters, Kuszewski, Tjandra and Clore 2 processing NMRPipe Frank Delaglio, Stephan Grzesiek, and Ad Bax 3 collection TopSpin 4 Bruker Biospin 4 peak picking CcpNmr Analysis 3.2.5 Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW 5 structure calculation X-PLOR NIH 3.9 Schwieters, Kuszewski, Tjandra and Clore 6 geometry optimization X-PLOR NIH 3.9 Schwieters, Kuszewski, Tjandra and Clore 7 chemical shift assignment CcpNmr Analysis 3.2.5 Skinner SP, Fogh RH, Boucher W, Ragan TJ, Mureddu LG, and Vuister GW