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Human Brain RNA Vault Shoulder bound to ADPR, focused refinement (EMPIAR-10766)
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.7577 f_angle_d 0.4455 f_chiral_restr 0.0459 f_bond_d 0.004 f_plane_restr 0.0037
Sample Human Brain RNA Vault Shoulder focused refinement
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 464690 Reported Resolution (Å) 2.62 Resolution Method FSC 0.143 CUT-OFF Other Details Particles were symmetry expanded in D39, re-centered and re-extracted. Refinement Type Symmetry Type POINT Point Symmetry D39
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 5000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC MODEL REFINEMENT PHENIX 1.21.2_5419 RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION