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ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 277 pH 6.60, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K
Crystal Properties Matthews coefficient Solvent content 2.9 57.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.07 α = 90 b = 28.07 β = 90 c = 53.35 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray DIFFRACTOMETER RIGAKU AFC-5R
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 3252 1742
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION 1.9 7 2 1108 0.208 0.2174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation n_phos_angle_it 14.24 n_phos_bond_it 12.6 n_sugar_angle_it 12.4 n_sugar_bond_it 9.9 n_multtor_nbd 0.135 n_singtor_nbd 0.069 n_phos_bond_angle_d 0.062 n_sugar_bond_angle_d 0.054 n_phos_bond_d 0.04 n_sugar_bond_d 0.022
RMS Deviations Key Refinement Restraint Deviation n_phos_angle_it 14.24 n_phos_bond_it 12.6 n_sugar_angle_it 12.4 n_sugar_bond_it 9.9 n_multtor_nbd 0.135 n_singtor_nbd 0.069 n_phos_bond_angle_d 0.062 n_sugar_bond_angle_d 0.054 n_phos_bond_d 0.04 n_sugar_bond_d 0.022 n_plane_restr 0.016 n_bond_d n_angle_d n_planar_d n_hb_or_metal_coord n_bond_angle_restr n_dihedral_angle_restr n_impr_tor n_chiral_restr n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 120 Solvent Atoms 49 Heterogen Atoms 38
Software Software Software Name Purpose NUCLSQ refinement