Experiment: 10FS

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7UY0

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6	298.15	0.2 M sodium chloride, 0.1 M MES monohydrate, pH 6.0, 20% (w/v) polyethylene glycol 6,000

Crystal Properties
Matthews coefficient	Solvent content
2.32	47.1

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	KB bent focusing mirror	2025-06-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 23-ID-B	1.033	APS	23-ID-B

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.3	39.12	99	0.068	0.07	0.019	1	14.9	13.4		45366

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.3	1.32	98.8		3.591	3.732	1.005	0.6	0.9	13.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.3	39.12	45351	2331	98.836	0.183	0.1819	0.1823	0.1979	0.1979	RANDOM	27.609

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.457		-1.326	-1.136		1.961

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.986
r_dihedral_angle_3_deg	13.079
r_dihedral_angle_2_deg	12.952
r_dihedral_angle_1_deg	8.501
r_lrange_it	7.319
r_lrange_other	7.29
r_scangle_it	4.167
r_scangle_other	4.165
r_scbond_it	2.899
r_scbond_other	2.897

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.986
r_dihedral_angle_3_deg	13.079
r_dihedral_angle_2_deg	12.952
r_dihedral_angle_1_deg	8.501
r_lrange_it	7.319
r_lrange_other	7.29
r_scangle_it	4.167
r_scangle_other	4.165
r_scbond_it	2.899
r_scbond_other	2.897
r_mcangle_it	2.577
r_mcangle_other	2.576
r_angle_refined_deg	1.9
r_mcbond_it	1.692
r_mcbond_other	1.692
r_angle_other_deg	0.979
r_nbd_refined	0.177
r_nbtor_refined	0.169
r_symmetry_nbd_refined	0.167
r_symmetry_nbd_other	0.145
r_nbd_other	0.126
r_xyhbond_nbd_refined	0.108
r_chiral_restr	0.105
r_symmetry_xyhbond_nbd_refined	0.089
r_symmetry_nbtor_other	0.071
r_bond_refined_d	0.011
r_gen_planes_refined	0.011
r_bond_other_d	0.006
r_gen_planes_other	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1357
Nucleic Acid Atoms
Solvent Atoms	110
Heterogen Atoms	50

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

10FS | pdb_000010fs