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Crystal Structure of Human Fgr SH3-SH2-High Affinity Linker Mutant 1 (HAL1) Domains.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7UY0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298.15 0.2 M sodium chloride, 0.1 M MES monohydrate, pH 6.0, 20% (w/v) polyethylene glycol 6,000
Crystal Properties Matthews coefficient Solvent content 2.32 47.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.443 α = 90 b = 34.794 β = 101.051 c = 61.677 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M KB bent focusing mirror 2025-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.033 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 39.12 99 0.068 0.07 0.019 1 14.9 13.4 45366
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 98.8 3.591 3.732 1.005 0.6 0.9 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.3 39.12 45351 2331 98.836 0.183 0.1819 0.1823 0.1979 0.1979 RANDOM 27.609
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.457 -1.326 -1.136 1.961
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.986 r_dihedral_angle_3_deg 13.079 r_dihedral_angle_2_deg 12.952 r_dihedral_angle_1_deg 8.501 r_lrange_it 7.319 r_lrange_other 7.29 r_scangle_it 4.167 r_scangle_other 4.165 r_scbond_it 2.899 r_scbond_other 2.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.986 r_dihedral_angle_3_deg 13.079 r_dihedral_angle_2_deg 12.952 r_dihedral_angle_1_deg 8.501 r_lrange_it 7.319 r_lrange_other 7.29 r_scangle_it 4.167 r_scangle_other 4.165 r_scbond_it 2.899 r_scbond_other 2.897 r_mcangle_it 2.577 r_mcangle_other 2.576 r_angle_refined_deg 1.9 r_mcbond_it 1.692 r_mcbond_other 1.692 r_angle_other_deg 0.979 r_nbd_refined 0.177 r_nbtor_refined 0.169 r_symmetry_nbd_refined 0.167 r_symmetry_nbd_other 0.145 r_nbd_other 0.126 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.105 r_symmetry_xyhbond_nbd_refined 0.089 r_symmetry_nbtor_other 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1357 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement Coot model building PHASER phasing Aimless data scaling xia2 data reduction