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FGFR2 mutant D650V with compound 12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UGL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 293 22% PEG 4,000, 200 mM Ammonium Sulfate, 100 mM Sodium Citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.66 53.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.909 α = 90 b = 96.909 β = 90 c = 145.896 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2021-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97625 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 55.06 99.9 0.094 15.4 20.2 80528
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 98.7 2.612 1.5 18.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.77 55.06 73790 3894 99.92 0.17384 0.17178 0.1798 0.2126 0.2145 RANDOM 44.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.2 -0.4 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.069 r_dihedral_angle_2_deg 13.424 r_long_range_B_refined 9.951 r_long_range_B_other 9.939 r_scangle_other 7.785 r_dihedral_angle_1_deg 6.165 r_scbond_it 5.542 r_scbond_other 5.541 r_mcangle_it 4.309 r_mcangle_other 4.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.069 r_dihedral_angle_2_deg 13.424 r_long_range_B_refined 9.951 r_long_range_B_other 9.939 r_scangle_other 7.785 r_dihedral_angle_1_deg 6.165 r_scbond_it 5.542 r_scbond_other 5.541 r_mcangle_it 4.309 r_mcangle_other 4.309 r_mcbond_it 3.21 r_mcbond_other 3.208 r_angle_refined_deg 2.097 r_angle_other_deg 0.725 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4818 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 263
Software Software Software Name Purpose REFMAC refinement SAINT data reduction Aimless data scaling PHASER phasing