Experiment: 10GA

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7UY0

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	298.15	0.2 M sodium chloride, 0.1 M Bis-Tris, pH 5.5, 25% w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.32	46.92

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M	kb bent focusing mirror	2021-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 23-ID-D	1.0	APS	23-ID-D

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	60.08	99.7	0.13	0.136	0.038	0.999	13.9	12.3		24665

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.63	95.9		2.126	2.261	0.749	0.7	2.3	8.6

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.6	60.08	24654	1219	99.652	0.17	0.1691	0.1686	0.1935	0.1947	RANDOM	21.687

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.015		-0.806	-0.844		1.097

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.387
r_dihedral_angle_3_deg	12.319
r_dihedral_angle_2_deg	8.013
r_dihedral_angle_1_deg	7.65
r_lrange_it	6.385
r_lrange_other	6.356
r_scangle_it	4.003
r_scangle_other	4.001
r_scbond_it	2.685
r_scbond_other	2.684

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.387
r_dihedral_angle_3_deg	12.319
r_dihedral_angle_2_deg	8.013
r_dihedral_angle_1_deg	7.65
r_lrange_it	6.385
r_lrange_other	6.356
r_scangle_it	4.003
r_scangle_other	4.001
r_scbond_it	2.685
r_scbond_other	2.684
r_mcangle_it	1.977
r_mcangle_other	1.976
r_angle_refined_deg	1.966
r_mcbond_it	1.301
r_mcbond_other	1.3
r_angle_other_deg	0.804
r_symmetry_nbd_refined	0.216
r_nbd_refined	0.206
r_nbtor_refined	0.183
r_symmetry_nbd_other	0.169
r_nbd_other	0.156
r_xyhbond_nbd_refined	0.152
r_symmetry_xyhbond_nbd_refined	0.134
r_chiral_restr	0.107
r_symmetry_nbtor_other	0.078
r_symmetry_xyhbond_nbd_other	0.061
r_bond_refined_d	0.012
r_gen_planes_refined	0.011
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1313
Nucleic Acid Atoms
Solvent Atoms	110
Heterogen Atoms	24

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

10GA | pdb_000010ga