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REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Crystallization Crystal Properties Matthews coefficient Solvent content 2 38.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.27 α = 90 b = 39.62 β = 90 c = 63.57 γ = 90
Symmetry Space Group P 21 21 21
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION 2.25 8 2 2430 0.163 0.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation n_phos_bond_it 5.693 n_phos_angle_it 5.227 n_sugar_angle_it 4.99 n_sugar_bond_it 4.282 n_chiral_restr 0.161 n_multtor_nbd 0.097 n_singtor_nbd 0.093 n_phos_bond_angle_d 0.057 n_sugar_bond_angle_d 0.04 n_phos_bond_d 0.026
RMS Deviations Key Refinement Restraint Deviation n_phos_bond_it 5.693 n_phos_angle_it 5.227 n_sugar_angle_it 4.99 n_sugar_bond_it 4.282 n_chiral_restr 0.161 n_multtor_nbd 0.097 n_singtor_nbd 0.093 n_phos_bond_angle_d 0.057 n_sugar_bond_angle_d 0.04 n_phos_bond_d 0.026 n_sugar_bond_d 0.024 n_plane_restr 0.014 n_bond_d n_angle_d n_planar_d n_hb_or_metal_coord n_bond_angle_restr n_dihedral_angle_restr n_impr_tor n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 486 Solvent Atoms 33 Heterogen Atoms 37
Software Software Software Name Purpose NUCLSQ refinement