AF_AFQ9YGK8F1

Computed structure model of Iroquois-class homeodomain protein irx-1-A

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Iroquois-class homeodomain protein irx-1-A	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process multicellular organismal process regulation of developmental process cellular developmental process regulation of cell differentiation neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development negative regulation of cell differentiation system development developmental process negative regulation of developmental process nervous system development generation of neurons negative regulation of neuron differentiation regulation of neuron differentiation cell fate specification cell fate commitment head development central nervous system development animal organ development brain development otic vesicle development sensory organ development tube formation embryo development epithelial tube formation tube morphogenesis inner ear development otic vesicle formation animal organ morphogenesis epithelial tube morphogenesis embryonic organ development embryonic organ morphogenesis ear morphogenesis epithelium development tube development ear development embryonic morphogenesis morphogenesis of an epithelium tissue development otic vesicle morphogenesis tissue morphogenesis anatomical structure morphogenesis sensory organ morphogenesis inner ear morphogenesis anatomical structure formation involved in morphogenesis mesoderm development pronephric nephron development proximal/distal pattern formation involved in pronephric nephron development pattern specification process proximal/distal pattern formation involved in nephron development renal system development regionalization pronephros development nephron development kidney development proximal/distal pattern formation kidney rudiment formation maintenance of animal organ identity maintenance of kidney identity kidney morphogenesis dorsal/ventral pattern formation cell development cellular response to stimulus cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus signaling negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction negative regulation of cellular response to growth factor stimulus negative regulation of BMP signaling pathway negative regulation of cell communication cell communication cellular response to endogenous stimulus signal transduction BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of signaling cell surface receptor signaling pathway regulation of BMP signaling pathway negative regulation of response to stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus negative regulation of signal transduction response to BMP regulation of response to stimulus regulation of cell communication transforming growth factor beta receptor superfamily signaling pathway response to growth factor negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway ectodermal placode development Spemann organizer formation Spemann organizer formation at the dorsal lip of the blastopore developmental induction embryonic epithelial tube formation kidney epithelium development nephron tubule morphogenesis pronephric nephron tubule morphogenesis pronephric nephron morphogenesis renal tubule morphogenesis segment specification nephron morphogenesis nephron epithelium morphogenesis segmentation nephron tubule development specification of pronephric tubule identity specification of nephron tubule identity nephron tubule formation renal tubule development pronephric nephron tubule development nephron epithelium development morphogenesis of embryonic epithelium pronephros morphogenesis stem cell fate commitment chordate embryonic development mesenchyme development neural crest formation embryo development ending in birth or egg hatching neural crest cell fate commitment neural crest cell differentiation stem cell fate specification neural crest cell fate specification epithelial to mesenchymal transition stem cell differentiation mesenchymal cell differentiation positive regulation of biological process positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation positive regulation of cellular process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II anterior/posterior pattern specification rostrocaudal neural tube patterning neural tube development neural tube patterning midbrain-hindbrain boundary development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR017970	Homeobox, conserved site	Conserved Site
A	IPR008422	KN homeodomain	Domain
A	IPR003893	Iroquois-class homeodomain protein	Domain
A	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A	IPR001356	Homeodomain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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AF_AFQ9YGK8F1

Computed structure model of Iroquois-class homeodomain protein irx-1-A

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage