AF_AFQ96SZ6F1

Computed structure model of Mitochondrial tRNA methylthiotransferase CDK5RAP1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Mitochondrial tRNA methylthiotransferase CDK5RAP1	methylthiotransferase activity alkylthioltransferase activity catalytic activity, acting on RNA transferase activity, transferring sulphur-containing groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity catalytic activity tRNA-2-methylthio-N(6)-dimethylallyladenosine(37) synthase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding methylthiotransferase activity alkylthioltransferase activity catalytic activity, acting on RNA transferase activity, transferring sulphur-containing groups catalytic activity, acting on a nucleic acid catalytic activity, acting on a tRNA transferase activity catalytic activity tRNA-2-methylthio-N(6)-dimethylallyladenosine(37) synthase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding protein binding kinase binding enzyme binding protein kinase binding cation binding ion binding metal ion binding	mitochondrial tRNA modification RNA metabolic process mitochondrial gene expression nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process mitochondrial RNA processing tRNA processing mitochondrial RNA modification tRNA threonylcarbamoyladenosine metabolic process RNA processing mitochondrial tRNA processing tRNA modification primary metabolic process mitochondrial tRNA modification RNA metabolic process mitochondrial gene expression nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process mitochondrial RNA processing tRNA processing mitochondrial RNA modification tRNA threonylcarbamoyladenosine metabolic process RNA processing mitochondrial tRNA processing tRNA modification primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process tRNA metabolic process RNA modification biosynthetic process macromolecule modification metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development regulation of biological process regulation of cellular process negative regulation of cellular process biological regulation negative regulation of biological process negative regulation of cell cycle cell cycle regulation of cell cycle regulation of catalytic activity negative regulation of catalytic activity regulation of transferase activity regulation of primary metabolic process negative regulation of kinase activity regulation of cyclin-dependent protein serine/threonine kinase activity phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process negative regulation of metabolic process regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation regulation of protein serine/threonine kinase activity regulation of phosphorus metabolic process regulation of metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of cyclin-dependent protein serine/threonine kinase activity negative regulation of protein serine/threonine kinase activity protein metabolic process negative regulation of macromolecule metabolic process negative regulation of cyclin-dependent protein kinase activity negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity regulation of macromolecule metabolic process negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation regulation of developmental process cellular developmental process regulation of cell differentiation generation of neurons neurogenesis neuron differentiation cell differentiation regulation of neuron differentiation positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of translational fidelity positive regulation of macromolecule metabolic process regulation of biological quality positive regulation of cellular process regulation of biosynthetic process translation regulation of gene expression positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of translational fidelity mitochondrial translation regulation of mitochondrial gene expression regulation of mitochondrial translation positive regulation of mitochondrial translation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen mitochondrial matrix

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007197	Radical SAM	Domain
A	IPR002792	TRAM domain	Domain
A	IPR006638	Elp3/MiaA/NifB-like, radical SAM core domain	Domain
A	IPR013848	Methylthiotransferase, N-terminal	Domain
A	IPR005839	Methylthiotransferase	Family
A	IPR023404	Radical SAM, alpha/beta horseshoe	Homologous Superfamily
A	IPR006463	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB	Family
A	IPR020612	Methylthiotransferase, conserved site	Conserved Site
A	IPR038135	Methylthiotransferase, N-terminal domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q96SZ6	cancer osteosarcoma lung cancer skin carcinoma melanoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.