AF_AFQ680Q4F1

Computed structure model of E3 SUMO-protein ligase SIZ1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	E3 SUMO-protein ligase SIZ1	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity SUMO transferase activity transferase activity catalytic activity SUMO ligase activity ubiquitin-like protein ligase activity SUMO binding protein binding binding ubiquitin-like protein binding cation binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity SUMO transferase activity transferase activity catalytic activity SUMO ligase activity ubiquitin-like protein ligase activity SUMO binding protein binding binding ubiquitin-like protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms negative regulation of response to biotic stimulus regulation of response to external stimulus negative regulation of biological process response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms negative regulation of response to biotic stimulus regulation of response to external stimulus negative regulation of biological process response to biotic stimulus regulation of systemic acquired resistance negative regulation of systemic acquired resistance regulation of response to stress response to external biotic stimulus regulation of biological process systemic acquired resistance negative regulation of response to stimulus response to other organism defense response biological regulation defense response to symbiont response to external stimulus regulation of response to stimulus defense response to other organism negative regulation of response to external stimulus negative regulation of defense response heat acclimation response to heat response to temperature stimulus cellular process cell division developmental process anatomical structure morphogenesis developmental growth unidimensional cell growth anatomical structure development growth cell morphogenesis cell growth developmental growth involved in morphogenesis regulation of growth multicellular organismal process plant organ development floral whorl development reproductive system development reproductive process flower development developmental process involved in reproduction multicellular organism development reproductive shoot system development plant-type ovary development plant ovule development carpel development gynoecium development reproductive structure development shoot system development post-embryonic development phyllome development system development floral organ development response to freezing response to cold peptidyl-lysine modification primary metabolic process protein sumoylation macromolecule modification peptidyl-amino acid modification metabolic process protein metabolic process macromolecule metabolic process protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal gametophyte development embryo sac development cellular response to stimulus positive regulation of response to biotic stimulus regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of response to external stimulus immune response-regulating signaling pathway positive regulation of immune response innate immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of innate immune response immune response regulation of innate immune response immune system process positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of response to water deprivation shoot regeneration regeneration regulation of developmental process regulation of reproductive process negative regulation of post-embryonic development negative regulation of flower development regulation of multicellular organismal process regulation of flower development regulation of multicellular organismal development negative regulation of developmental process regulation of shoot system development regulation of post-embryonic development negative regulation of reproductive process negative regulation of multicellular organismal process detection of stimulus detection of chemical stimulus detection of phosphate ion positive chemotaxis chemotaxis multi-multicellular organism process pollination pollen tube guidance taxis pollen tube development locomotion cellular response to nutrient levels response to nutrient levels cellular response to phosphate starvation cellular response to stress response to starvation cellular response to starvation response to lipid abscisic acid-activated signaling pathway regulation of signal transduction hormone-mediated signaling pathway cellular response to endogenous stimulus response to hormone regulation of cellular response to alcohol cellular response to hormone stimulus cellular response to abscisic acid stimulus regulation of signaling regulation of response to alcohol response to abscisic acid response to alcohol response to endogenous stimulus cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol cellular response to lipid regulation of cell communication regulation of abscisic acid-activated signaling pathway regulation of salicylic acid metabolic process benzene-containing compound metabolic process oxoacid metabolic process ketone metabolic process carboxylic acid metabolic process salicylic acid metabolic process organic acid metabolic process regulation of ketone metabolic process regulation of small molecule metabolic process phenol-containing compound metabolic process small molecule metabolic process monocarboxylic acid metabolic process regulation of metabolic process nitrate assimilation reactive nitrogen species metabolic process nitrogen cycle metabolic process regulation of nitrogen cycle metabolic process nitrate metabolic process regulation of nitrate assimilation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001965	Zinc finger, PHD-type	Domain
A	IPR004181	Zinc finger, MIZ-type	Domain
A	IPR036361	SAP domain superfamily	Homologous Superfamily
A	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR003034	SAP domain	Domain
A	IPR031141	E3 SUMO-protein ligase SIZ1/2, SP-RING finger	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.