AF_AFP77172F1

Computed structure model of Cyclic di-GMP phosphodiesterase PdeF

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cyclic di-GMP phosphodiesterase PdeF	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity cyclic-guanylate-specific phosphodiesterase activity hydrolase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity cyclic-guanylate-specific phosphodiesterase activity hydrolase activity catalytic activity	cellular response to stimulus response to stimulus cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular response to stimulus response to stimulus cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide response to oxidative stress cellular response to reactive oxygen species cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular process regulation of biological process cell aggregation regulation of cellular process biofilm formation regulation of single-species biofilm formation biological process involved in intraspecies interaction between organisms biological regulation single-species biofilm formation aggregation of unicellular organisms response to decreased oxygen levels cellular response to oxygen levels cellular response to decreased oxygen levels cellular response to anoxia response to anoxia response to oxygen levels response to abiotic stimulus	cellular anatomical structure membrane cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000160	GGDEF domain	Domain
A	IPR007895	MASE1	Domain
A	IPR050706	Cyclic di-GMP phosphodiesterase-like	Family
A	IPR001633	EAL domain	Domain
A	IPR035919	EAL domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.