AF_AFP52926F1

Computed structure model of High mobility group protein HMGI-C

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	High mobility group protein HMGI-C	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding cAMP response element binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid 5'-deoxyribose-5-phosphate lyase activity lyase activity catalytic activity carbon-oxygen lyase activity protein binding C2H2 zinc finger domain binding protein domain specific binding MH1 domain binding DNA secondary structure binding minor groove of adenine-thymine-rich DNA binding DNA-(apurinic or apyrimidinic site) endonuclease activity DNA endonuclease activity endonuclease activity nuclease activity DNA nuclease activity transcription regulator activity transcription coregulator activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding transcription corepressor activity SMAD binding MH2 domain binding protein-containing complex binding chromatin binding nucleosome binding nucleosomal DNA binding chromatin DNA binding DNA binding, bending enzyme binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development regulation of biological process regulation of developmental process biological regulation regulation of stem cell population maintenance regulation of multicellular organismal process maintenance of cell number stem cell population maintenance spermatogenesis sexual reproduction multicellular organismal reproductive process male gamete generation gamete generation cellular process cell division regulation of biosynthetic process regulation of cellular process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of localization regulation of hormone secretion nitrogen compound transport regulation of peptide secretion signaling transport hormone secretion cell communication localization peptide secretion regulation of secretion by cell secretion by cell signal release regulation of biological quality regulation of peptide hormone secretion regulation of signaling growth hormone secretion regulation of transport secretion regulation of hormone levels regulation of growth hormone secretion regulation of peptide transport export from cell cell-cell signaling establishment of localization regulation of secretion peptide transport peptide hormone secretion regulation of cell communication hormone transport cellular component organization organelle organization chromosome condensation chromosome organization cellular component organization or biogenesis regulation of stem cell proliferation cell population proliferation positive regulation of cell population proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation head development forebrain development endocrine system development pituitary gland development gland development brain development diencephalon development nervous system development central nervous system development chondrocyte proliferation cellular developmental process cell differentiation mesenchyme development mesenchymal cell differentiation tissue development RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription fibroblast proliferation epithelial to mesenchymal transition cell proliferation in forebrain neural precursor cell proliferation cellular response to stimulus response to stimulus DNA metabolic process base-excision repair cellular response to stress DNA damage response response to stress DNA repair fat cell differentiation intracellular receptor signaling pathway response to lipid negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction hormone-mediated signaling pathway intracellular signal transduction negative regulation of cell communication negative regulation of intracellular steroid hormone receptor signaling pathway cellular response to endogenous stimulus response to hormone regulation of intracellular signal transduction response to steroid hormone regulation of intracellular steroid hormone receptor signaling pathway negative regulation of cellular process signal transduction nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus steroid hormone receptor signaling pathway cellular response to hormone stimulus negative regulation of response to stimulus response to endogenous stimulus negative regulation of signal transduction cellular response to chemical stimulus regulation of response to stimulus response to chemical cellular response to lipid nuclear receptor-mediated signaling pathway regulation of protein modification process positive regulation of phosphorylation regulation of catalytic activity regulation of protein phosphorylation positive regulation of protein metabolic process regulation of transferase activity positive regulation of phosphate metabolic process positive regulation of protein serine/threonine kinase activity positive regulation of molecular function positive regulation of protein modification process phosphate-containing compound metabolic process protein metabolic process positive regulation of protein kinase activity phosphorus metabolic process protein modification process positive regulation of protein phosphorylation protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process positive regulation of catalytic activity regulation of protein kinase activity regulation of molecular function positive regulation of kinase activity regulation of kinase activity macromolecule modification regulation of protein serine/threonine kinase activity regulation of phosphorylation regulation of phosphorus metabolic process somatic stem cell population maintenance biological process involved in interspecies interaction between organisms host-mediated suppression of viral proces host-mediated perturbation of viral transcription host-mediated suppression of viral transcription host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process connective tissue development skeletal system development chondrocyte differentiation cartilage development negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process multicellular organism growth developmental growth growth positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process adipose tissue development fat pad development chromatin organization astrocyte differentiation cell development regulation of neurogenesis regulation of cell differentiation regulation of gliogenesis regulation of astrocyte differentiation regulation of cell development regulation of nervous system development neurogenesis negative regulation of neurogenesis gliogenesis negative regulation of nervous system development negative regulation of cell differentiation regulation of multicellular organismal development negative regulation of developmental process regulation of glial cell differentiation negative regulation of astrocyte differentiation negative regulation of gliogenesis negative regulation of cell development negative regulation of glial cell differentiation glial cell differentiation negative regulation of multicellular organismal process negative regulation of Wnt signaling pathway Wnt signaling pathway cell surface receptor signaling pathway regulation of Wnt signaling pathway epithelium development tube development respiratory tube development lung epithelium development lung development respiratory system development negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of cell cycle process cell cycle regulation of cell cycle cell cycle process epithelial cell proliferation involved in lung morphogenesis lung morphogenesis animal organ morphogenesis epithelial cell proliferation regulation of epithelial cell proliferation involved in lung morphogenesis positive regulation of epithelial cell proliferation involved in lung morphogenesis positive regulation of epithelial cell proliferation anatomical structure morphogenesis regulation of epithelial cell proliferation formation of primary germ layer embryonic morphogenesis embryo development gastrulation endoderm development anatomical structure formation involved in morphogenesis endoderm formation endodermal cell differentiation regulation of fibroblast proliferation positive regulation of fibroblast proliferation regulation of double-strand break repair regulation of cellular response to stress negative regulation of double-strand break repair via nonhomologous end joining negative regulation of DNA repair regulation of response to stress negative regulation of double-strand break repair regulation of double-strand break repair via nonhomologous end joining double-strand break repair double-strand break repair via nonhomologous end joining regulation of DNA repair negative regulation of DNA metabolic process regulation of DNA metabolic process mesodermal-endodermal cell signaling branching morphogenesis of an epithelial tube tube morphogenesis epithelial tube morphogenesis morphogenesis of an epithelium tissue morphogenesis morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium cell surface receptor signaling pathway via STAT regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via STAT regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT cellular senescence oncogene-induced cell senescence adrenal gland development angiogenesis regulation of vasculature development positive regulation of developmental process regulation of anatomical structure morphogenesis blood vessel development blood vessel morphogenesis positive regulation of angiogenesis vasculature development circulatory system development positive regulation of vasculature development regulation of angiogenesis positive regulation of multicellular organismal process positive regulation of cell proliferation in bone marrow cell proliferation in bone marrow regulation of cell proliferation in bone marrow regulation of cellular senescence negative regulation of cellular senescence cellular component biogenesis cellular component assembly chromatin remodeling heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of gene expression, epigenetic regulation of multicellular organism growth regulation of growth regulation of developmental growth positive regulation of multicellular organism growth positive regulation of growth positive regulation of developmental growth response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus mesodermal cell differentiation mesoderm morphogenesis mesoderm formation mesoderm development regulation of DNA binding regulation of binding negative regulation of binding negative regulation of molecular function negative regulation of DNA binding regulation of single stranded viral RNA replication via double stranded DNA intermediate viral life cycle negative regulation of single stranded viral RNA replication via double stranded DNA intermediate negative regulation of viral process viral RNA genome replication viral process negative regulation of viral genome replication single stranded viral RNA replication via double stranded DNA intermediate regulation of viral process regulation of viral life cycle viral genome replication regulation of viral genome replication stem cell differentiation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome intracellular membraneless organelle chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex SMAD protein complex male germ cell nucleus germ cell nucleus chromatin senescence-associated heterochromatin focus heterochromatin nucleoplasm protein-DNA complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000116	High mobility group protein HMGA	Family
A	IPR017956	AT hook, DNA-binding motif	Conserved Site
A	IPR000637	HMG-I/HMG-Y, DNA-binding, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P52926	cancer polycystic ovary syndrome uterine corpus leiomyoma 12q14 microdeletion syndrome Neoplasm Invasiveness well-differentiated liposarcoma maturity-onset diabetes of the young pancreatic intraductal papillary-mucinous neoplasm pleomorphic adenoma psoriasis atypical teratoid rhabdoid tumor ulcerative colitis Dedifferentiated liposarcoma large cell medulloblastoma lung cancer cancer polycystic ovary syndrome uterine corpus leiomyoma 12q14 microdeletion syndrome Neoplasm Invasiveness well-differentiated liposarcoma maturity-onset diabetes of the young pancreatic intraductal papillary-mucinous neoplasm pleomorphic adenoma psoriasis atypical teratoid rhabdoid tumor ulcerative colitis Dedifferentiated liposarcoma large cell medulloblastoma lung cancer malignant mesothelioma non-small cell lung carcinoma pilocytic astrocytoma adrenal cortex carcinoma benign neoplasm cutaneous lupus erythematosus glioblastoma lipoma malignant ependymoma malignant pancreatic neoplasm ovarian cancer pituitary cancer primitive neuroectodermal tumor atypical lipomatous tumor type 2 diabetes mellitus cystic fibrosis interstitial cystitis lung adenocarcinoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data