AF_AFP16989F1

Computed structure model of Y-box-binding protein 3

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Y-box-binding protein 3	small GTPase binding protein binding binding enzyme binding GTPase binding nucleic acid binding mRNA 3'-UTR binding RNA binding mRNA binding ribonucleoprotein complex binding protein-containing complex binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding small GTPase binding protein binding binding enzyme binding GTPase binding nucleic acid binding mRNA 3'-UTR binding RNA binding mRNA binding ribonucleoprotein complex binding protein-containing complex binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development system development spermatogenesis sexual reproduction multicellular organismal reproductive process male gamete generation gamete generation fertilization regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process apoptotic process cell death programmed cell death regulation of muscle tissue development regulation of developmental process skeletal muscle tissue development negative regulation of biological process regulation of skeletal muscle tissue development striated muscle tissue development muscle structure development skeletal muscle organ development negative regulation of muscle organ development regulation of multicellular organismal process muscle tissue development muscle organ development negative regulation of skeletal muscle tissue development negative regulation of developmental process regulation of striated muscle tissue development tissue development negative regulation of muscle tissue development regulation of muscle organ development negative regulation of multicellular organismal process negative regulation of striated muscle tissue development embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development cellular response to stimulus response to osmotic stress response to stimulus cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus cellular response to chemical stimulus hyperosmotic response cellular hyperosmotic response cellular response to stress response to stress response to chemical response to abiotic stimulus cellular response to abiotic stimulus necroptotic process negative regulation of programmed cell death negative regulation of necroptotic process programmed necrotic cell death regulation of programmed cell death regulation of necroptotic process negative regulation of programmed necrotic cell death negative regulation of cellular process regulation of programmed necrotic cell death negative regulation of reproductive process regulation of reproductive process response to peptide cellular response to tumor necrosis factor response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of cytoplasmic translation positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of protein metabolic process primary metabolic process translation positive regulation of gene expression regulation of translation cytoplasmic translation regulation of cytoplasmic translation regulation of cellular response to stress regulation of signal transduction intracellular signal transduction cell communication regulation of response to osmotic stress regulation of cellular response to osmotic stress negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway regulation of apoptotic process regulation of intrinsic apoptotic signaling pathway in response to osmotic stress negative regulation of apoptotic process intrinsic apoptotic signaling pathway in response to osmotic stress regulation of response to stimulus regulation of apoptotic signaling pathway signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of intrinsic apoptotic signaling pathway negative regulation of cell communication regulation of intracellular signal transduction regulation of response to stress negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway regulation of cell communication regulation of growth regulation of developmental growth developmental growth positive regulation of organ growth growth organ growth positive regulation of developmental process positive regulation of growth regulation of organ growth positive regulation of multicellular organismal process positive regulation of developmental growth cellular developmental process cell development programmed cell death involved in cell development cell differentiation ectopic germ cell programmed cell death RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process nucleobase-containing compound catabolic process negative regulation of gene expression nucleic acid catabolic process catabolic process macromolecule catabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization regulation of mRNA catabolic process negative regulation of catabolic process negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of catabolic process mRNA metabolic process regulation of mRNA stability RNA stabilization regulation of RNA stability regulation of mRNA metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol synapse cell junction cell-cell junction apical junction complex bicellular tight junction tight junction anchoring junction perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol synapse cell junction cell-cell junction apical junction complex bicellular tight junction tight junction anchoring junction perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002059	Cold-shock protein Csp, DNA-binding	Domain
A	IPR019844	Cold-shock domain, conserved site	Conserved Site
A	IPR011129	Cold-shock domain	Domain
A	IPR050181	Cold shock domain-containing protein	Family
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P16989	astrocytic tumor esophageal adenocarcinoma invasive ductal breast carcinoma Lyme disease medulloblastoma pancreatic intraductal papillary-mucinous neoplasm spina bifida B-cell chronic lymphocytic leukemia glioblastoma lung cancer malignant ependymoma ovarian cancer Pick disease subependymal giant cell astrocytoma breast cancer astrocytic tumor esophageal adenocarcinoma invasive ductal breast carcinoma Lyme disease medulloblastoma pancreatic intraductal papillary-mucinous neoplasm spina bifida B-cell chronic lymphocytic leukemia glioblastoma lung cancer malignant ependymoma ovarian cancer Pick disease subependymal giant cell astrocytoma breast cancer heart disease lung carcinoma malignant glioma pancreatic ductal adenocarcinoma pituitary cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.