AF_AFO75096F1

Computed structure model of Low-density lipoprotein receptor-related protein 4

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Low-density lipoprotein receptor-related protein 4	molecular transducer activity coreceptor activity signaling receptor activity protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding cation binding ion binding calcium ion binding molecular transducer activity coreceptor activity signaling receptor activity protein tyrosine kinase binding protein binding binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding cation binding ion binding calcium ion binding metal ion binding small molecule binding apolipoprotein binding scaffold protein binding identical protein binding protein homodimerization activity protein dimerization activity	regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process cellular component organization localization neuromuscular junction development receptor clustering synapse organization cellular component organization or biogenesis intracellular protein localization regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process cellular component organization localization neuromuscular junction development receptor clustering synapse organization cellular component organization or biogenesis intracellular protein localization regulation of skeletal muscle acetylcholine-gated channel clustering regulation of receptor clustering postsynaptic membrane organization regulation of protein localization to membrane positive regulation of cellular process membrane organization regulation of biological process postsynapse organization positive regulation of receptor clustering skeletal muscle acetylcholine-gated channel clustering biological regulation positive regulation of protein localization to membrane localization within membrane protein localization to membrane positive regulation of skeletal muscle acetylcholine-gated channel clustering cell junction organization regulation of cellular localization macromolecule localization positive regulation of protein localization cellular process multicellular organismal process catabolic process amyloid-beta metabolic process amyloid-beta clearance by cellular catabolic process metabolic process amyloid-beta clearance developmental process dorsal/ventral pattern formation multicellular organism development anatomical structure development pattern specification process regionalization cellular response to stimulus response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication small GTPase-mediated signal transduction Rac protein signal transduction intracellular signal transduction intracellular signaling cassette limb development appendage development cellular developmental process nervous system development generation of neurons neurogenesis cell differentiation system development axonogenesis cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development cell projection morphogenesis neuron differentiation neuron projection morphogenesis negative regulation of cellular component organization regulation of cell projection organization negative regulation of axonogenesis negative regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis regulation of nervous system development negative regulation of neurogenesis regulation of axonogenesis negative regulation of nervous system development regulation of multicellular organismal process negative regulation of cell differentiation negative regulation of cell projection organization regulation of anatomical structure morphogenesis regulation of multicellular organismal development plasma membrane bounded cell projection organization negative regulation of developmental process axon development negative regulation of neuron projection development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis negative regulation of cell development neuron development regulation of plasma membrane bounded cell projection organization animal organ development kidney development renal system development positive regulation of cell communication positive regulation of signal transduction regulation of small GTPase mediated signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of intracellular signal transduction regulation of Rac protein signal transduction positive regulation of Rac protein signal transduction positive regulation of small GTPase mediated signal transduction positive regulation of signaling odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis presynapse organization membrane biogenesis presynaptic membrane assembly membrane assembly cellular component biogenesis presynaptic membrane organization cellular component assembly cell junction assembly synapse assembly presynapse assembly import into cell transport endocytosis establishment of localization vesicle-mediated transport epithelium development epidermis development molting cycle process hair cycle tissue development skin development skin epidermis development hair follicle development molting cycle hair cycle process dendrite development dendrite morphogenesis developmental growth growth synaptic assembly at neuromuscular junction positive regulation of presynaptic membrane organization positive regulation of cellular component organization regulation of presynaptic membrane organization regulation of synapse organization regulation of synapse structure or activity regulation of biological quality regulation of postsynapse assembly regulation of synapse assembly postsynapse assembly regulation of postsynapse organization regulation of cellular component biogenesis regulation of cell junction assembly enzyme-linked receptor protein signaling pathway postsynaptic membrane assembly ossification regulation of ossification negative regulation of ossification proximal/distal pattern formation embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development appendage morphogenesis embryonic digit morphogenesis limb morphogenesis	somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection neuromuscular junction synapse cell junction cell body neuronal cell body cell periphery membrane somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection neuromuscular junction synapse cell junction cell body neuronal cell body cell periphery membrane plasma membrane plasma membrane region synaptic membrane cell surface postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization organelle asymmetric synapse membrane microdomain membrane raft plasma membrane raft

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A	IPR026823	Complement Clr-like EGF domain	Domain
A	IPR036055	LDL receptor-like superfamily	Homologous Superfamily
A	IPR000033	LDLR class B repeat	Repeat
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site	Conserved Site
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat	Repeat
A	IPR000742	EGF-like domain	Domain
A	IPR051221	Low-density lipoprotein receptor-related	Family
A	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: O75096	congenital myasthenic syndrome sclerosteosis Cenani-Lenz syndactyly syndrome sclerosteosis 2 congenital myasthenic syndrome 17 syndactyly Tooth Abnormalities peripheral nervous system disease polysyndactyly 4 atypical teratoid rhabdoid tumor intellectual disability malignant colon neoplasm medulloblastoma non-small cell lung carcinoma oligodendroglioma congenital myasthenic syndrome sclerosteosis Cenani-Lenz syndactyly syndrome sclerosteosis 2 congenital myasthenic syndrome 17 syndactyly Tooth Abnormalities peripheral nervous system disease polysyndactyly 4 atypical teratoid rhabdoid tumor intellectual disability malignant colon neoplasm medulloblastoma non-small cell lung carcinoma oligodendroglioma peripheral neuropathy psoriasis subependymal giant cell astrocytoma breast cancer vascular disease cutaneous lupus erythematosus large cell medulloblastoma malignant ependymoma myasthenia gravis non-syndromic syndactyly osteogenesis imperfecta polydactyly Down syndrome lung cancer malignant mesothelioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.