9YU9 | pdb_00009yu9

The crystal structure of human abl1 kinase domain in complex with PH-ELV-1022

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tyrosine-protein kinase ABL1	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding protein tyrosine kinase activity catalytic activity, acting on a protein cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding protein tyrosine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding DNA binding nucleic acid binding delta-catenin binding non-membrane spanning protein tyrosine kinase activity signaling receptor binding ephrin receptor binding kinase binding enzyme binding protein kinase binding mitogen-activated protein kinase binding DNA secondary structure binding four-way junction DNA binding bubble DNA binding enzyme regulator activity protein serine/threonine kinase activator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding magnesium ion binding adenylyltransferase activity nicotinate-nucleotide adenylyltransferase activity nucleotidyltransferase activity neuropilin binding protein serine/threonine kinase activity SNARE binding syntaxin binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding proline-rich region binding actin monomer binding SH2 domain binding protein domain specific binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein kinase C binding	negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling negative regulation of long-term synaptic potentiation positive regulation of cell communication regulation of cellular process modulation of chemical synaptic transmission signaling positive regulation of biological process negative regulation of biological process cell communication long-term synaptic potentiation synaptic signaling regulation of biological quality positive regulation of cellular process regulation of synaptic plasticity trans-synaptic signaling regulation of biological process regulation of signaling biological regulation cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation regulation of cell communication cellular process positive regulation of signaling response to stimulus response to chemical response to xenobiotic stimulus cellular response to stimulus regulation of DNA recombination regulation of double-strand break repair regulation of cellular response to stress regulation of primary metabolic process negative regulation of DNA repair nucleobase-containing compound metabolic process cellular response to stress response to stress regulation of response to stress negative regulation of double-strand break repair negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process recombinational repair regulation of nucleobase-containing compound metabolic process negative regulation of double-strand break repair via homologous recombination double-strand break repair via homologous recombination DNA repair negative regulation of macromolecule metabolic process double-strand break repair negative regulation of response to stimulus negative regulation of metabolic process DNA recombination primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process regulation of DNA repair regulation of double-strand break repair via homologous recombination negative regulation of DNA recombination DNA damage response regulation of response to stimulus metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process macromolecule modification protein metabolic process protein modification process myoblast proliferation cell population proliferation regulation of tube diameter multicellular organismal process system process regulation of tube size regulation of system process positive regulation of vasoconstriction circulatory system process regulation of blood circulation vascular process in circulatory system regulation of vasoconstriction positive regulation of multicellular organismal process regulation of multicellular organismal process blood vessel diameter maintenance vasoconstriction blood circulation regulation of anatomical structure size endothelial cell migration cell migration cell motility platelet-derived growth factor receptor-beta signaling pathway cell surface receptor signaling pathway platelet-derived growth factor receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway signal transduction enzyme-linked receptor protein signaling pathway positive regulation of substrate adhesion-dependent cell spreading regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of substrate adhesion-dependent cell spreading regulation of cell adhesion cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion substrate adhesion-dependent cell spreading regulation of leukocyte differentiation cellular developmental process regulation of developmental process regulation of leukocyte activation cell development regulation of cell activation mononuclear cell differentiation regulation of cell differentiation lymphocyte activation lymphocyte differentiation regulation of cell development leukocyte activation regulation of T cell differentiation multicellular organism development T cell activation cell differentiation anatomical structure development T cell differentiation regulation of immune system process developmental process regulation of lymphocyte differentiation regulation of multicellular organismal development hemopoiesis cell activation regulation of T cell activation immune system process regulation of hemopoiesis leukocyte differentiation regulation of lymphocyte activation regulation of cellular component organization positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization cellular component organization cellular component biogenesis cellular component assembly cell junction assembly regulation of cell-substrate junction organization cellular component organization or biogenesis focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell-matrix adhesion regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly neuropilin signaling pathway response to oxidative stress cellular response to chemical stimulus cellular response to oxidative stress cellular response to chemical stress RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction phospholipase C/protein kinase C signal transduction positive regulation of phospholipase C/protein kinase C signal transduction cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound response to catecholamine cellular response to monoamine stimulus cellular response to catecholamine stimulus response to endoplasmic reticulum stress regulation of hematopoietic stem cell differentiation stem cell differentiation regulation of stem cell differentiation hematopoietic stem cell differentiation regulation of hematopoietic progenitor cell differentiation hematopoietic progenitor cell differentiation response to epinephrine regulation of cytoskeleton organization regulation of actin filament-based process actin cytoskeleton organization regulation of organelle organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cytoskeleton organization small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of Cdc42 protein signal transduction regulation of Rho protein signal transduction Rho protein signal transduction Cdc42 protein signal transduction chromosome organization DNA conformation change protein polymerization actin polymerization or depolymerization actin filament polymerization protein-containing complex organization actin filament organization protein-containing complex assembly supramolecular fiber organization regulation of modification of synaptic structure regulation of synapse organization regulation of synapse structure or activity synapse organization modification of synaptic structure axon extension regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection organization neuron projection development cell projection morphogenesis neuron differentiation neuron projection morphogenesis system development nervous system development developmental growth involved in morphogenesis generation of neurons plasma membrane bounded cell projection morphogenesis cell growth cell morphogenesis regulation of axon extension neurogenesis regulation of extent of cell growth regulation of cell size neuron projection extension regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron development animal gross anatomical part developmental process regulation of mitochondrial membrane potential membrane depolarization mitochondrial depolarization regulation of membrane potential branching morphogenesis of an epithelial tube angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis positive regulation of morphogenesis of an epithelium regulation of morphogenesis of an epithelium epithelial tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development regulation of morphogenesis of a branching structure epithelium development blood vessel morphogenesis tube development morphogenesis of an epithelium positive regulation of angiogenesis tissue development regulation of blood vessel branching vasculature development circulatory system development positive regulation of blood vessel branching branching involved in blood vessel morphogenesis tissue morphogenesis positive regulation of vasculature development regulation of angiogenesis morphogenesis of a branching structure anatomical structure formation involved in morphogenesis morphogenesis of a branching epithelium regulation of neuron projection development dendrite development positive regulation of neuron projection development positive regulation of cell projection organization regulation of cell projection organization positive regulation of dendrite development regulation of dendrite development regulation of plasma membrane bounded cell projection organization behavior learning learning or memory nervous system process cognition associative learning podocyte apoptotic process apoptotic process cell death programmed cell death epithelial cell apoptotic process import into cell immune response-regulating cell surface receptor signaling pathway transport Fc-gamma receptor signaling pathway involved in phagocytosis localization immune response-activating signaling pathway Fc receptor signaling pathway immune response-regulating signaling pathway positive regulation of immune response phagocytosis Fc-gamma receptor signaling pathway positive regulation of immune system process immune response immune response-activating cell surface receptor signaling pathway Fc receptor mediated stimulatory signaling pathway establishment of localization regulation of immune response endocytosis activation of immune response positive regulation of organelle organization regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization positive regulation of stress fiber assembly stress fiber assembly regulation of actin filament organization actomyosin structure organization positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization actin filament bundle assembly regulation of supramolecular fiber organization positive regulation of extracellular matrix organization extracellular matrix organization regulation of extracellular matrix organization extracellular structure organization external encapsulating structure organization regulation of establishment of T cell polarity regulation of establishment or maintenance of cell polarity establishment of lymphocyte polarity establishment of T cell polarity positive regulation of leukocyte cell-cell adhesion establishment or maintenance of cell polarity leukocyte cell-cell adhesion positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell-cell adhesion positive regulation of establishment of T cell polarity positive regulation of leukocyte activation regulation of cell-cell adhesion positive regulation of T cell activation establishment of cell polarity regulation of establishment of cell polarity regulation of leukocyte cell-cell adhesion cardiac muscle cell proliferation organ growth striated muscle tissue development muscle cell proliferation cardiac muscle tissue growth muscle tissue development striated muscle cell proliferation heart development heart growth cardiac muscle tissue development animal organ development mismatch repair regulation of localization regulation of transport regulation of endocytosis ephrin receptor signaling pathway positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process neuron apoptotic process positive regulation of neuron apoptotic process regulation of neuron apoptotic process regulation of postsynaptic specialization assembly postsynapse organization organelle assembly postsynaptic specialization assembly postsynapse assembly regulation of organelle assembly postsynaptic specialization organization synapse assembly immune effector process ERBB signaling pathway epidermal growth factor receptor signaling pathway protein localization to microtubule cytoskeleton protein localization to microtubule end protein localization to microtubule plus-end protein localization to microtubule protein localization to cytoplasmic microtubule protein localization to cytoskeleton protein localization to organelle macromolecule localization protein localization to cytoplasmic microtubule plus-end intracellular protein localization positive regulation of locomotion regulation of cell motility regulation of lymphocyte migration positive regulation of cell migration positive regulation of cell motility regulation of cell migration positive regulation of mononuclear cell migration regulation of mononuclear cell migration locomotion positive regulation of lymphocyte migration regulation of leukocyte migration positive regulation of T cell migration lymphocyte migration positive regulation of leukocyte migration leukocyte migration regulation of locomotion regulation of T cell migration mononuclear cell migration T cell migration cellular response to oscillatory fluid shear stress response to oscillatory fluid shear stress response to fluid shear stress vascular endothelial cell response to oscillatory fluid shear stress vascular endothelial cell response to fluid shear stress cellular response to fluid shear stress negative regulation of post-translational protein modification regulation of protein modification process regulation of catalytic activity negative regulation of catalytic activity regulation of protein ubiquitination regulation of transferase activity negative regulation of ubiquitin-protein transferase activity protein ubiquitination negative regulation of protein modification process regulation of ubiquitin-protein transferase activity negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal negative regulation of protein metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of molecular function regulation of molecular function post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process cell migration involved in sprouting angiogenesis regulation of blood vessel endothelial cell migration blood vessel endothelial cell migration regulation of endothelial cell migration positive regulation of cell migration involved in sprouting angiogenesis regulation of cell migration involved in sprouting angiogenesis sprouting angiogenesis positive regulation of blood vessel endothelial cell migration positive regulation of endothelial cell migration cell cycle mitotic cell cycle positive regulation of cytosolic calcium ion concentration signal transduction in response to DNA damage cellular response to endogenous stimulus cellular response to growth factor stimulus response to transforming growth factor beta cellular response to transforming growth factor beta stimulus response to endogenous stimulus response to growth factor phospholipase C-inhibiting G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway fibroblast proliferation positive regulation of cell population proliferation regulation of fibroblast proliferation regulation of cell population proliferation positive regulation of fibroblast proliferation integrin-mediated signaling pathway regulation of microtubule polymerization or depolymerization microtubule cytoskeleton organization regulation of protein-containing complex assembly microtubule polymerization or depolymerization regulation of microtubule-based process microtubule polymerization regulation of microtubule polymerization regulation of protein polymerization microtubule-based process regulation of microtubule cytoskeleton organization cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide cellular response to reactive oxygen species apoptotic signaling pathway intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism regulation of cell cycle	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane cytoskeleton membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane cytoskeleton membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen nuclear lumen cell periphery plasma membrane protein-containing complex nuclear body nucleoplasm somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse ruffle cell leading edge perinuclear region of cytoplasm cell body neuronal cell body postsynapse mitochondrion growth cone axon distal axon site of polarized growth postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, B	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
A, B	IPR008266	Tyrosine-protein kinase, active site	Active Site
A, B	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B	IPR001452	SH3 domain	Domain
A, B	IPR035837	Tyrosine-protein kinase ABL, SH2 domain	Domain
A, B	IPR000980	SH2 domain	Domain
A, B	IPR015015	F-actin binding	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR050198	Non-receptor tyrosine kinases involved in cell signaling	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: P00519	chronic myelogenous leukemia, BCR-ABL1 positive congenital heart defects and skeletal malformations syndrome Failure to Thrive tubular adenocarcinoma adenocarcinoma liver cancer cancer esophageal cancer granular cell carcinoma breast carcinoma neoplasm of esophagus ovarian cancer cribriform carcinoma dermatofibrosarcoma protuberans abetalipoproteinemia chronic myelogenous leukemia, BCR-ABL1 positive congenital heart defects and skeletal malformations syndrome Failure to Thrive tubular adenocarcinoma adenocarcinoma liver cancer cancer esophageal cancer granular cell carcinoma breast carcinoma neoplasm of esophagus ovarian cancer cribriform carcinoma dermatofibrosarcoma protuberans abetalipoproteinemia hematologic disease astrocytic tumor lung large cell carcinoma Burkitt lymphoma childhood acute lymphoblastic leukemia congenital anemia pancreatic ductal adenocarcinoma congenital heart disease precancerous condition cribriform carcinoma of breast Down syndrome systemic mastocytosis acute lymphoblastic leukemia gastrointestinal stromal tumor idiopathic hypereosinophilic syndrome atypical teratoid rhabdoid tumor lymphatic system disease breast cancer malignant pancreatic neoplasm medulloblastoma chronic eosinophilic leukemia osteosarcoma tuberculosis acute T cell leukemia juvenile dermatomyositis liver neoplasm malignant ependymoma melanoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	PTR	Parent Component: TYR : AA0039 : O4'-phospho-L-tyrosine MOD:00048