9YF5 | pdb_00009yf5

N4 Empty Particle C6 Tail

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth PF]	tRNA-synt_1e	e9yf5PF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
YB [auth PE]	tRNA-synt_1e	e9yf5PE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
XB [auth PD]	tRNA-synt_1e	e9yf5PD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
WB [auth PC]	tRNA-synt_1e	e9yf5PC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
VB [auth PB]	tRNA-synt_1e	e9yf5PB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
M [auth PA]	tRNA-synt_1e	e9yf5PA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
FC [auth PL]	tRNA-synt_1e	e9yf5PL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
EC [auth PK]	tRNA-synt_1e	e9yf5PK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
DC [auth PJ]	tRNA-synt_1e	e9yf5PJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
CC [auth PI]	tRNA-synt_1e	e9yf5PI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
BC [auth PH]	tRNA-synt_1e	e9yf5PH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
AC [auth PG]	tRNA-synt_1e	e9yf5PG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: tRNA-synt_1e	ECOD (v295.2)
D [auth SA]		e9yf5SA2	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)
C [auth LA]		e9yf5LA5	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], FC [auth PL], M [auth PA], VB [auth PB], WB [auth PC], XB [auth PD], YB [auth PE], ZB [auth PF]	PF23899	Phage SU10 portal protein (SU10_portal)	Phage SU10 portal protein	-	Family
AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], Q [auth SB]	PF23845	Non-contractile tail sheath protein TIM barrel (TIM-barrel_NCTSP)	Non-contractile tail sheath protein TIM barrel	This entry represents the TIM barrel domain found in the non-contractile tail sheath protein of Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. Th ...	This entry represents the TIM barrel domain found in the non-contractile tail sheath protein of Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. The function of this domain is unknown. This entry also includes sequences from bacteria, predominantly from Sphingobium spp.	Domain
BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], ZA [auth LE]	PF23845	Non-contractile tail sheath protein TIM barrel (TIM-barrel_NCTSP)	Non-contractile tail sheath protein TIM barrel	This entry represents the TIM barrel domain found in the non-contractile tail sheath protein of Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. Th ...	This entry represents the TIM barrel domain found in the non-contractile tail sheath protein of Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. The function of this domain is unknown. This entry also includes sequences from bacteria, predominantly from Sphingobium spp.	Domain
BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], ZA [auth LE]	PF23844	Non-contractile tail sheath N-terminal domain (NCTSP_N)	Non-contractile tail sheath N-terminal domain	This entry represents the N-terminal domain found in the non-contractile tail sheath protein from Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. ...	This entry represents the N-terminal domain found in the non-contractile tail sheath protein from Bacteriophage N4 (BPN4). This protein is essential for BPN4 infectivity and it is hypothesized that it mediates binding with target cell receptors [1]. The function of this domain is unknown. This entry also includes sequences from bacteria, predominantly from Sphingobium spp.	Domain
A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], LA [auth AG], MA [auth AH], N [auth AC], O [auth AD], XA [auth AI], YA [auth AJ], Z [auth AE]	PF24175	SU10 adaptor protein (SU10_adaptor)	SU10 adaptor protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], FC [auth PL], M [auth PA], VB [auth PB], WB [auth PC], XB [auth PD], YB [auth PE], ZB [auth PF]	Probable portal protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-
DB [auth XI], EB [auth XJ], FA [auth XE], FB [auth YI], G [auth XA], DB [auth XI], EB [auth XJ], FA [auth XE], FB [auth YI], G [auth XA], GA [auth XF], GB [auth YJ], H [auth XB], HA [auth YE], HB [auth ZI], I [auth YA], IA [auth YF], IB [auth ZJ], J [auth YB], JA [auth ZE], K [auth ZA], KA [auth ZF], L [auth ZB], PB [auth XK], QB [auth XL], RA [auth XG], RB [auth YK], SA [auth XH], SB [auth YL], T [auth XC], TA [auth YG], TB [auth ZK], U [auth XD], UA [auth YH], UB [auth ZL], V [auth YC], VA [auth ZG], W [auth YD], WA [auth ZH], X [auth ZC], Y [auth ZD]	60 kDa protein	-	-	-
BB [auth TI], CB [auth TJ], DA [auth TE], E [auth TA], EA [auth TF], BB [auth TI], CB [auth TJ], DA [auth TE], E [auth TA], EA [auth TF], F [auth TB], NB [auth TK], OB [auth TL], PA [auth TG], QA [auth TH], R [auth TC], S [auth TD]	Gp54	-	-	-
AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], Q [auth SB]	Gp64	-	-	-
BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], ZA [auth LE]	Non-contractile tail sheath	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virus tail virion component
A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], LA [auth AG], MA [auth AH], N [auth AC], O [auth AD], XA [auth AI], YA [auth AJ], Z [auth AE]	30 kDa protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], AC [auth PG], BC [auth PH], CC [auth PI], DC [auth PJ], EC [auth PK], FC [auth PL], M [auth PA], VB [auth PB], WB [auth PC], XB [auth PD], YB [auth PE], ZB [auth PF]	IPR056909	Phage SU10 portal protein	Family
DB [auth XI], EB [auth XJ], FA [auth XE], FB [auth YI], G [auth XA], DB [auth XI], EB [auth XJ], FA [auth XE], FB [auth YI], G [auth XA], GA [auth XF], GB [auth YJ], H [auth XB], HA [auth YE], HB [auth ZI], I [auth YA], IA [auth YF], IB [auth ZJ], J [auth YB], JA [auth ZE], K [auth ZA], KA [auth ZF], L [auth ZB], PB [auth XK], QB [auth XL], RA [auth XG], RB [auth YK], SA [auth XH], SB [auth YL], T [auth XC], TA [auth YG], TB [auth ZK], U [auth XD], UA [auth YH], UB [auth ZL], V [auth YC], VA [auth ZG], W [auth YD], WA [auth ZH], X [auth ZC], Y [auth ZD]	IPR001611	Leucine-rich repeat	Repeat
AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], AB [auth SE], CA [auth SC], D [auth SA], MB [auth SF], OA [auth SD], Q [auth SB]	IPR057122	Non-contractile tail sheath, TIM barrel	Domain
BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], ZA [auth LE]	IPR057102	Non-contractile tail sheath, N-terminal domain	Domain
BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], BA [auth LC], C [auth LA], LB [auth LF], NA [auth LD], P [auth LB], ZA [auth LE]	IPR057122	Non-contractile tail sheath, TIM barrel	Domain
A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], A [auth AA], AA [auth AF], B [auth AB], JB [auth AK], KB [auth AL], LA [auth AG], MA [auth AH], N [auth AC], O [auth AD], XA [auth AI], YA [auth AJ], Z [auth AE]	IPR056209	SU10 adaptor protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.