9VFL | pdb_00009vfl

Crystal structure of PLCG1 SH2(C) domain with a triple Tyr phosphorylated peptide derived from NTRK1

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00017	SH2 domain (SH2)	SH2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphatidylinositol phospholipase C activity phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity C-type glycerophospholipase activity catalytic activity lipase activity neurotrophin TRK receptor binding neurotrophin TRKA receptor binding protein binding binding phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphatidylinositol phospholipase C activity phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity C-type glycerophospholipase activity catalytic activity lipase activity neurotrophin TRK receptor binding neurotrophin TRKA receptor binding protein binding binding signaling receptor binding cytokine receptor binding neurotrophin receptor binding cation binding ion binding calcium ion binding metal ion binding small molecule binding phosphatidylinositol-4,5-bisphosphate phospholipase C activity lysophospholipase C activity kinase binding enzyme binding protein kinase binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process cell migration cell motility cellular response to stimulus lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process cell migration cell motility cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication phosphatidylinositol-mediated signaling signal transduction cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway ERBB signaling pathway epidermal growth factor receptor signaling pathway enzyme-linked receptor protein signaling pathway cell population proliferation positive regulation of cell population proliferation endothelial cell proliferation positive regulation of epithelial cell proliferation positive regulation of biological process regulation of vascular endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation positive regulation of endothelial cell proliferation regulation of epithelial cell proliferation vascular endothelial cell proliferation epithelial cell proliferation positive regulation of vascular endothelial cell proliferation positive regulation of cellular process immune response-regulating cell surface receptor signaling pathway immune response Fc receptor signaling pathway immune response-regulating signaling pathway regulation of response to stimulus immune system process Fc-epsilon receptor signaling pathway regulation of immune response regulation of immune system process regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response negative regulation of biological process inflammatory response to antigenic stimulus response to stress regulation of response to stress negative regulation of inflammatory response to antigenic stimulus defense response negative regulation of response to stimulus negative regulation of immune response regulation of inflammatory response to antigenic stimulus response to external stimulus regulation of inflammatory response negative regulation of immune system process negative regulation of response to external stimulus negative regulation of defense response inflammatory response positive regulation of response to stimulus immune response-activating signaling pathway positive regulation of immune response positive regulation of immune system process immune response-activating cell surface receptor signaling pathway T cell receptor signaling pathway antigen receptor-mediated signaling pathway activation of immune response calcium-mediated signaling intracellular signaling cassette positive regulation of locomotion regulation of cell motility regulation of blood vessel endothelial cell migration endothelial cell migration positive regulation of cell migration positive regulation of blood vessel endothelial cell migration regulation of locomotion positive regulation of endothelial cell migration positive regulation of cell motility regulation of cell migration blood vessel endothelial cell migration regulation of endothelial cell migration locomotion multicellular organismal process regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process multicellular organism development tube morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport release of sequestered calcium ion into cytosol localization intercellular transport monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport positive regulation of endothelial cell apoptotic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process endothelial cell apoptotic process apoptotic process programmed cell death regulation of endothelial cell apoptotic process regulation of calcium ion transport regulation of localization positive regulation of cation transmembrane transport positive regulation of calcium ion transport regulation of monoatomic ion transmembrane transport regulation of calcium ion transmembrane transport positive regulation of monoatomic ion transport positive regulation of calcium ion transmembrane transport positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport positive regulation of release of sequestered calcium ion into cytosol regulation of metal ion transport regulation of transport regulation of release of sequestered calcium ion into cytosol regulation of monoatomic ion transport regulation of transmembrane transport positive regulation of transport regulation of monoatomic cation transmembrane transport phosphatidylinositol metabolic process cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor response to growth factor positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration epithelial cell migration regulation of epithelial cell migration epithelium migration	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex organelle nucleus nuclear protein-containing complex COP9 signalosome intracellular membrane-bounded organelle ruffle plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	High affinity nerve growth factor receptor	molecular transducer activity catalytic activity, acting on a protein GPI-linked ephrin receptor activity ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity molecular transducer activity catalytic activity, acting on a protein GPI-linked ephrin receptor activity ephrin receptor activity kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity neurotrophin binding protein binding binding nerve growth factor binding growth factor binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding signaling receptor binding cytokine receptor binding neurotrophin receptor binding neurotrophin p75 receptor binding neurotrophin receptor activity nerve growth factor receptor activity identical protein binding kinase binding enzyme binding protein homodimerization activity protein dimerization activity	response to stimulus response to chemical response to xenobiotic stimulus protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process response to stimulus response to chemical response to xenobiotic stimulus protein phosphorylation protein autophosphorylation phosphorylation primary metabolic process peptidyl-tyrosine modification peptidyl-tyrosine autophosphorylation macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process peptidyl-tyrosine phosphorylation protein modification process response to stress response to wounding response to axon injury developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation multicellular organism development multicellular organismal process anatomical structure development sympathetic nervous system development autonomic nervous system development nervous system development system development cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to nerve growth factor stimulus response to nerve growth factor response to growth factor regulation of neuron projection development regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation generation of neurons neuron development regulation of plasma membrane bounded cell projection organization response to electrical stimulus response to abiotic stimulus detection of external stimulus system process nervous system process response to external stimulus sensory perception of temperature stimulus sensory perception of pain detection of temperature stimulus involved in sensory perception response to temperature stimulus detection of abiotic stimulus detection of stimulus sensory perception detection of temperature stimulus detection of stimulus involved in sensory perception detection of temperature stimulus involved in sensory perception of pain programmed cell death involved in cell development cell death programmed cell death response to nutrient levels sex differentiation epithelial cell differentiation Sertoli cell differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics reproductive structure development epithelium development gonad development reproductive system development Sertoli cell development animal organ development tissue development epithelial cell development cellular response to stimulus cell surface receptor signaling pathway signaling cell communication nerve growth factor signaling pathway neurotrophin signaling pathway signal transduction rhythmic process circadian rhythm detection of mechanical stimulus involved in sensory perception of pain response to mechanical stimulus detection of mechanical stimulus involved in sensory perception sensory perception of mechanical stimulus detection of mechanical stimulus positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction intracellular signal transduction positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic regulation of synaptic transmission, glutamatergic synaptic signaling trans-synaptic signaling positive regulation of synaptic transmission cell-cell signaling positive regulation of synaptic transmission, glutamatergic chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction neuron apoptotic process negative regulation of neuron apoptotic process regulation of neuron apoptotic process olfactory nerve development nerve development cranial nerve development cellular response to chemical stimulus cellular response to nicotine response to nicotine axonogenesis plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis axon guidance axon development cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron projection guidance negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway behavior learning or memory cognition neurotrophin TRK receptor signaling pathway positive regulation of programmed cell death response to acid chemical response to hydrostatic pressure response to oxygen-containing compound response to water innervation axonogenesis involved in innervation small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction regulation of Ras protein signal transduction positive regulation of Ras protein signal transduction Ras protein signal transduction positive regulation of small GTPase mediated signal transduction	somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle endosome membrane intracellular anatomical structure endosome membrane intracellular vesicle late endosome membrane somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle endosome membrane intracellular anatomical structure endosome membrane intracellular vesicle late endosome membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle late endosome cytoplasm vesicle organelle membrane protein-containing complex signaling receptor complex cell body neuronal cell body axon mitochondrion cell surface cell periphery plasma membrane early endosome recycling endosome recycling endosome membrane early endosome membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR035724	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR002048	EF-hand domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR057061	PLCG, EF-hand domain 2	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR001192	Phosphoinositide phospholipase C family	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR001452	SH3 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR001849	Pleckstrin homology domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR036860	SH2 domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR035023	PLC-gamma, C-terminal SH2 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR001711	Phospholipase C, phosphatidylinositol-specific, Y domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000980	SH2 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR016279	Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase gamma	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000008	C2 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000909	Phosphatidylinositol-specific phospholipase C, X domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR011992	EF-hand domain pair	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR056586	PLCG1, EF-hand	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR035024	PLC-gamma, N-terminal SH2 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR035892	C2 domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR008266	Tyrosine-protein kinase, active site	Active Site
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR000719	Protein kinase domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR001611	Leucine-rich repeat	Repeat
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR020777	Growth factor receptor NTRK	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR031635	Growth factor receptor NTRK, leucine rich repeat C-terminal	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR000483	Cysteine-rich flanking region, C-terminal	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR007110	Immunoglobulin-like domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR017441	Protein kinase, ATP binding site	Binding Site
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR040665	Tyrosine kinase receptor A, transmembrane domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR002011	Tyrosine-protein kinase, receptor class II, conserved site	Conserved Site
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR050122	Receptor Tyrosine Kinase	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR020461	High affinity nerve growth factor receptor NTRK1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	: P19174	adult T-cell leukemia/lymphoma angiosarcoma primary cutaneous T-cell non-Hodgkin lymphoma Sezary syndrome acute T cell leukemia bipolar disorder lung cancer osteosarcoma granulomatous slack skin disease Lymphoma, T-Cell, Cutaneous heart disease myocardial infarction
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	: P04629	hereditary sensory and autonomic neuropathy type 4 familial medullary thyroid carcinoma malignant glioma neuroblastoma schizoaffective disorder Lewy body dementia neuralgia hereditary sensory and autonomic neuropathy schizophrenia Lung Injury mixed glioma bipolar disorder cancer medulloblastoma Charcot-Marie-Tooth disease hereditary sensory and autonomic neuropathy type 4 familial medullary thyroid carcinoma malignant glioma neuroblastoma schizoaffective disorder Lewy body dementia neuralgia hereditary sensory and autonomic neuropathy schizophrenia Lung Injury mixed glioma bipolar disorder cancer medulloblastoma Charcot-Marie-Tooth disease ovarian serous adenocarcinoma psoriasis hypothyroidism thyroid gland papillary carcinoma glioma non-small cell lung carcinoma hereditary sensory and autonomic neuropathy type 1 hereditary sensory and autonomic neuropathy type 5 Riley-Day syndrome intellectual disability schizophreniform disorder sensory peripheral neuropathy colorectal adenocarcinoma digestive system disease Hashimoto thyroiditis hereditary sensory and autonomic neuropathy type 2

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PTR	Parent Component: TYR : AA0039 : O4'-phospho-L-tyrosine MOD:00048

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.