9SDX | pdb_00009sdx

Structure of RBR binding E2 variant crosslinked with NEDD8-CUL5-RBX2 bound ARIH2 and Ub

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth N]	NEDD8	protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding	macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process localization macromolecule localization intracellular protein localization catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process macromolecule modification metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process protein modification process localization macromolecule localization intracellular protein localization catabolic process proteolysis involved in protein catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of proteolysis regulation of metabolic process post-translational protein modification protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal developmental process anatomical structure morphogenesis anatomical structure development ubiquitin-dependent protein catabolic process multicellular organismal process regulation of cellular component organization cellular component organization cellular component biogenesis multicellular organism development cellular component assembly regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality system development postsynapse organization postsynapse assembly regulation of postsynapse organization nervous system development regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen synapse cell junction glutamatergic synapse postsynapse
B [auth R]	RING-box protein 2	protein binding binding cullin family protein binding cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity NEDD8 transferase activity catalytic activity, acting on a protein acyltransferase activity protein binding binding cullin family protein binding cation binding transition metal ion binding copper ion binding ion binding metal ion binding small molecule binding aminoacyltransferase activity ubiquitin-like protein transferase activity NEDD8 transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity ubiquitin-protein transferase activity NEDD8 ligase activity zinc ion binding	response to stimulus response to redox state primary metabolic process macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein ubiquitination response to stimulus response to redox state primary metabolic process macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein neddylation protein modification by small protein conjugation protein modification by small protein conjugation or removal protein ubiquitination developmental process multicellular organismal process regulation of biological process regulation of cell motility regulation of cellular process neuron migration cellular developmental process biological regulation nervous system development regulation of neuron migration generation of neurons neurogenesis multicellular organism development cell differentiation regulation of locomotion anatomical structure development regulation of cell migration cell migration cell motility locomotion system development catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein K11-linked ubiquitination protein polyubiquitination cellular response to stimulus cell surface receptor signaling pathway signaling cell communication reelin-mediated signaling pathway signal transduction cellular response to topologically incorrect protein endoplasmic reticulum unfolded protein response cellular response to unfolded protein response to unfolded protein intracellular signal transduction cellular response to stress response to stress response to topologically incorrect protein response to endoplasmic reticulum stress	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
C [auth U]	Ubiquitin	protein tag activity molecular tag activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding RNA binding nucleic acid binding	catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis metabolic process cellular process macromolecule metabolic process protein metabolic process protein ubiquitination macromolecule modification catabolic process proteolysis involved in protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis metabolic process cellular process macromolecule metabolic process protein metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm vesicle organelle membrane endocytic vesicle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cytosol endosome membrane endosome endomembrane system mitochondrial membrane mitochondrion organelle outer membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane cell periphery plasma membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
D [auth G]	L3A2-1	-	-	-
E [auth C]	Cullin-5	ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity molecular transducer activity signaling receptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin ligase complex scaffold activity protein-macromolecule adaptor activity molecular adaptor activity molecular transducer activity signaling receptor activity ubiquitin protein ligase binding protein binding binding ubiquitin-like protein ligase binding enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell death intracellular signal transduction cell communication apoptotic signaling pathway cellular process signal transduction apoptotic process intrinsic apoptotic signaling pathway cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cell death intracellular signal transduction cell communication apoptotic signaling pathway cellular process signal transduction apoptotic process intrinsic apoptotic signaling pathway programmed cell death primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process developmental process multicellular organismal process regulation of cell motility neuron migration cellular developmental process nervous system development regulation of neuron migration generation of neurons neurogenesis multicellular organism development cell differentiation regulation of locomotion anatomical structure development regulation of cell migration cell migration cell motility locomotion system development ERBB2 signaling pathway cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway ERBB signaling pathway enzyme-linked receptor protein signaling pathway protein K11-linked ubiquitination protein polyubiquitination reelin-mediated signaling pathway mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex SCF ubiquitin ligase complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex Cul5-RING ubiquitin ligase complex SCF ubiquitin ligase complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle membraneless organelle site of DNA damage intracellular membraneless organelle chromosome
F [auth H]	E3 ubiquitin-protein ligase ARIH2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin-like protein conjugating enzyme binding protein binding binding enzyme binding ubiquitin conjugating enzyme binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin-like protein conjugating enzyme binding protein binding binding enzyme binding ubiquitin conjugating enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process developmental process stem cell proliferation cell population proliferation cellular developmental process hemopoiesis cell differentiation anatomical structure development hematopoietic stem cell proliferation cell development cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process regulation of localization establishment of protein localization regulation of biological process regulation of protein localization protein targeting regulation of protein targeting to mitochondrion regulation of establishment of protein localization biological regulation positive regulation of biological process positive regulation of establishment of protein localization establishment of localization regulation of establishment of protein localization to mitochondrion localization establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein targeting to mitochondrion positive regulation of protein targeting to mitochondrion intracellular protein localization establishment of protein localization to mitochondrion positive regulation of establishment of protein localization to mitochondrion developmental cell growth developmental growth growth cell growth protein polyubiquitination protein K63-linked ubiquitination protein K48-linked ubiquitination	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth N]	IPR019954	Ubiquitin conserved site	Conserved Site
A [auth N]	IPR050158	Ubiquitin and ubiquitin-like	Family
A [auth N]	IPR038738	Nedd8-like ubiquitin	Domain
A [auth N]	IPR000626	Ubiquitin-like domain	Domain
A [auth N]	IPR019956	Ubiquitin domain	Domain
A [auth N]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
B [auth R]	IPR051031	RING-box E3 Ubiquitin Ligase	Family
B [auth R]	IPR024766	Zinc finger, RING-H2-type	Domain
B [auth R]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
B [auth R]	IPR001841	Zinc finger, RING-type	Domain
C [auth U]	IPR019954	Ubiquitin conserved site	Conserved Site
C [auth U]	IPR000626	Ubiquitin-like domain	Domain
C [auth U]	IPR019956	Ubiquitin domain	Domain
C [auth U]	IPR050158	Ubiquitin and ubiquitin-like	Family
C [auth U]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
E [auth C]	IPR045093	Cullin	Family
E [auth C]	IPR016158	Cullin homology domain	Domain
E [auth C]	IPR016157	Cullin, conserved site	Conserved Site
E [auth C]	IPR001373	Cullin, N-terminal	Domain
E [auth C]	IPR019559	Cullin, neddylation domain	Domain
E [auth C]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
E [auth C]	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
E [auth C]	IPR036317	Cullin homology domain superfamily	Homologous Superfamily
E [auth C]	IPR016159	Cullin repeat-like-containing domain superfamily	Homologous Superfamily
F [auth H]	IPR002867	IBR domain	Domain
F [auth H]	IPR044066	TRIAD supradomain	Domain
F [auth H]	IPR047555	E3 ubiquitin-protein ligase ARIH2, BRcat domain	Domain
F [auth H]	IPR018957	Zinc finger, C3HC4 RING-type	Domain
F [auth H]	IPR045840	Ariadne domain	Domain
F [auth H]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
F [auth H]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
F [auth H]	IPR031127	E3 ubiquitin ligase RBR family	Family
F [auth H]	IPR047556	E3 ubiquitin-protein ligase TRIAD1, Rcat domain	Domain
F [auth H]	IPR001841	Zinc finger, RING-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth N]	Pharos: Q15843	language disorder
B [auth R]	Pharos: Q9UBF6	lung cancer ovarian cancer medulloblastoma pancreatic ductal adenocarcinoma non-small cell lung carcinoma plasma cell myeloma
C [auth U]	Pharos: P0CG48	acute myeloid leukemia heart disease myocardial infarction pancreatic ductal adenocarcinoma astrocytic tumor lung cancer osteosarcoma renal cell carcinoma glioblastoma malignant pancreatic neoplasm ovarian cancer
E [auth C]	Pharos: Q93034	breast carcinoma breast cancer malignant mesothelioma Mammary Neoplasms, Human plasma cell myeloma osteosarcoma psoriasis lymphoplasmacytic lymphoma ovarian cancer rheumatoid arthritis
F [auth H]	Pharos: O95376	lung cancer ovarian cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm osteosarcoma Pick disease