9RPD | pdb_00009rpd

D. melanogaster Augmin TII N-clamp (GST-fusion) bound to a microtubule, well-defined subset of particles

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth E]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044257	3001758	SCOP2B (2022-06-29)
I [auth E]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036009	3001732	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036009	3001732	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044257	3001758	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036009	3001732	SCOP2B (2022-06-29)
G [auth C]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044257	3001758	SCOP2B (2022-06-29)
F [auth A]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044257	3001758	SCOP2B (2022-06-29)
F [auth A]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036009	3001732	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth A], G [auth C], H [auth G], I [auth E]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
F [auth A], G [auth C], H [auth G], I [auth E]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
D [auth B], E [auth D]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
D [auth B], E [auth D]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
B [auth J]	PF14661	HAUS augmin-like complex subunit 6 N-terminus (HAUS6_N)	HAUS augmin-like complex subunit 6 N-terminus	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth A], G [auth C], H [auth G], I [auth E]	Tubulin alpha-1A chain	structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle cell projection organelle cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle cell projection organelle cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
D [auth B], E [auth D]	Tubulin beta chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process neuron migration cellular developmental process nervous system development cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cell migration cell motility system development	cellular anatomical structure intracellular anatomical structure cytoplasm polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
C [auth K]	Augmin complex subunit msd5,Green fluorescent protein,Glutathione S-transferase class-mu 26 kDa isozyme	glutathione transferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	glutathione metabolic process modified amino acid metabolic process metabolic process cellular process sulfur compound metabolic process amide metabolic process bioluminescence generation of precursor metabolites and energy microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly glutathione metabolic process modified amino acid metabolic process metabolic process cellular process sulfur compound metabolic process amide metabolic process bioluminescence generation of precursor metabolites and energy microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle cellular component organization or biogenesis chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation microtubule-based process cytoskeleton organization protein polymerization protein-containing complex organization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation protein-containing complex assembly supramolecular fiber organization mitotic spindle-templated microtubule nucleation cell division	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex HAUS complex microtubule associated complex cytoplasm polymeric cytoskeletal fiber intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex HAUS complex microtubule associated complex cytoplasm polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
B [auth J]	Augmin complex subunit dgt6	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding protein-macromolecule adaptor activity molecular adaptor activity	protein polymerization protein-containing complex organization microtubule cytoskeleton organization microtubule polymerization cellular component organization cellular component biogenesis organelle organization microtubule polymerization or depolymerization cellular component assembly microtubule nucleation protein-containing complex assembly cellular process microtubule-based process cellular component organization or biogenesis protein polymerization protein-containing complex organization microtubule cytoskeleton organization microtubule polymerization cellular component organization cellular component biogenesis organelle organization microtubule polymerization or depolymerization cellular component assembly microtubule nucleation protein-containing complex assembly cellular process microtubule-based process cellular component organization or biogenesis supramolecular fiber organization mitotic spindle-templated microtubule nucleation cytoskeleton organization cell division regulation of biological process mitotic nuclear division regulation of cellular component organization regulation of cellular process regulation of cell cycle process organelle fission biological regulation regulation of mitotic nuclear division regulation of organelle organization mitotic cell cycle regulation of mitotic cell cycle nuclear division mitotic cell cycle process regulation of nuclear division cell cycle regulation of cell cycle cell cycle process microtubule organizing center organization centrosome duplication centrosome cycle membraneless organelle assembly mitotic sister chromatid segregation chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization organelle assembly chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly nuclear chromosome segregation	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome centrosome microtubule organizing center protein-containing complex HAUS complex microtubule associated complex cytoplasm polymeric cytoskeletal fiber mitotic spindle spindle microtubule mitotic spindle microtubule supramolecular fiber microtubule supramolecular polymer
A [auth I]	Augmin complex subunit dgt4	-	microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle cellular component organization or biogenesis chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle cellular component organization or biogenesis chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation cellular process microtubule-based process cytoskeleton organization protein polymerization protein-containing complex organization microtubule polymerization microtubule polymerization or depolymerization microtubule nucleation protein-containing complex assembly supramolecular fiber organization mitotic spindle-templated microtubule nucleation cell division regulation of biological process regulation of cellular component organization regulation of cellular process regulation of cell cycle process biological regulation regulation of mitotic nuclear division regulation of organelle organization regulation of mitotic cell cycle regulation of nuclear division regulation of cell cycle	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex HAUS complex microtubule associated complex cytoplasm polymeric cytoskeletal fiber intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton protein-containing complex HAUS complex microtubule associated complex cytoplasm polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth A], G [auth C], H [auth G], I [auth E]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
F [auth A], G [auth C], H [auth G], I [auth E]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
F [auth A], G [auth C], H [auth G], I [auth E]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
F [auth A], G [auth C], H [auth G], I [auth E]	IPR017975	Tubulin, conserved site	Conserved Site
F [auth A], G [auth C], H [auth G], I [auth E]	IPR002452	Alpha tubulin	Family
F [auth A], G [auth C], H [auth G], I [auth E]	IPR000217	Tubulin	Family
F [auth A], G [auth C], H [auth G], I [auth E]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
F [auth A], G [auth C], H [auth G], I [auth E]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
F [auth A], G [auth C], H [auth G], I [auth E]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
D [auth B], E [auth D]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
D [auth B], E [auth D]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
D [auth B], E [auth D]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
D [auth B], E [auth D]	IPR017975	Tubulin, conserved site	Conserved Site
D [auth B], E [auth D]	IPR000217	Tubulin	Family
D [auth B], E [auth D]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
D [auth B], E [auth D]	IPR002453	Beta tubulin	Family
D [auth B], E [auth D]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
D [auth B], E [auth D]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
D [auth B], E [auth D]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
C [auth K]	IPR004046	Glutathione S-transferase, C-terminal	Domain
C [auth K]	IPR050213	Glutathione S-transferase superfamily	Family
C [auth K]	IPR010987	Glutathione S-transferase, C-terminal-like	Domain
C [auth K]	IPR036282	Glutathione S-transferase, C-terminal domain superfamily	Homologous Superfamily
C [auth K]	IPR004045	Glutathione S-transferase, N-terminal	Domain
C [auth K]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
C [auth K]	IPR040079	Glutathione transferase family	Family
C [auth K]	IPR000786	Green fluorescent protein, GFP	Family
C [auth K]	IPR011584	Green fluorescent protein-related	Family
C [auth K]	IPR009017	Green fluorescent protein	Homologous Superfamily
B [auth J]	IPR028163	HAUS augmin-like complex subunit 6, N-terminal	Domain
B [auth J]	IPR026797	HAUS augmin-like complex subunit 6	Family