In situ cryo-EM structure of outer membrane cap (OMC) of the Legionella Dot/Icm T4SS machine
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| BA [auth Bb] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| FB [auth Cf] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| H [auth Ah] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| JC [auth Dj] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| LA [auth Bl] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| ND [auth En] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| PB [auth Cp] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| R [auth Ar] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| TC [auth Dt] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| VA [auth Bv] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| XD [auth Ex] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| ZB [auth Cz] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| DD [auth Ed] | SCOP2B Superfamily | OmpA-like | 8074167 | 3001650 | SCOP2B (2022-06-29) |
| A [auth Aa] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| AD [auth Ea] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| CB [auth Cc] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| E [auth Ae] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| EA [auth Be] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| GC [auth Dg] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| IA [auth Bi] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| IB [auth Ci] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| K [auth Ak] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| KD [auth Ek] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| MB [auth Cm] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| MC [auth Dm] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| O [auth Ao] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| OA [auth Bo] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| QC [auth Dq] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| QD [auth Eq] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| SA [auth Bs] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| SB [auth Cs] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| U [auth Au] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| UD [auth Eu] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| WB [auth Cw] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| WC [auth Dw] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| Y [auth Ay] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| YA [auth By] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| GD [auth Eg] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
| CC [auth Dc] | SCOP2B Superfamily | STN domain-like | 8090382 | 3002388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth Ab] | Cofilin_ADF | e9nguAb1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| DC [auth Dd] | Cofilin_ADF | e9nguDd1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| HD [auth Eh] | Cofilin_ADF | e9nguEh1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| JB [auth Cj] | Cofilin_ADF | e9nguCj1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| L [auth Al] | Cofilin_ADF | e9nguAl1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| NC [auth Dn] | Cofilin_ADF | e9nguDn1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| PA [auth Bp] | Cofilin_ADF | e9nguBp1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| RD [auth Er] | Cofilin_ADF | e9nguEr1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| TB [auth Ct] | Cofilin_ADF | e9nguCt1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| V [auth Av] | Cofilin_ADF | e9nguAv1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| XC [auth Dx] | Cofilin_ADF | e9nguDx1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| ZA [auth Bz] | Cofilin_ADF | e9nguBz1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| FA [auth Bf] | Cofilin_ADF | e9nguBf1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| BA [auth Bb] | Cofilin_ADF | e9nguBb1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| FB [auth Cf] | Cofilin_ADF | e9nguCf1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| H [auth Ah] | Cofilin_ADF | e9nguAh1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| JC [auth Dj] | Cofilin_ADF | e9nguDj1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| LA [auth Bl] | Cofilin_ADF | e9nguBl1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| ND [auth En] | Cofilin_ADF | e9nguEn1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| PB [auth Cp] | Cofilin_ADF | e9nguCp1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| R [auth Ar] | Cofilin_ADF | e9nguAr1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| TC [auth Dt] | Cofilin_ADF | e9nguDt1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| VA [auth Bv] | Cofilin_ADF | e9nguBv1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| XD [auth Ex] | Cofilin_ADF | e9nguEx1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| ZB [auth Cz] | Cofilin_ADF | e9nguCz1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| DD [auth Ed] | Cofilin_ADF | e9nguEd1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| A [auth Aa] | Cofilin_ADF | e9nguAa1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| AD [auth Ea] | Cofilin_ADF | e9nguEa1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| CB [auth Cc] | Cofilin_ADF | e9nguCc1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| E [auth Ae] | Cofilin_ADF | e9nguAe1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| EA [auth Be] | Cofilin_ADF | e9nguBe1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| GC [auth Dg] | Cofilin_ADF | e9nguDg1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| IA [auth Bi] | Cofilin_ADF | e9nguBi1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| IB [auth Ci] | Cofilin_ADF | e9nguCi1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| K [auth Ak] | Cofilin_ADF | e9nguAk1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| KD [auth Ek] | Cofilin_ADF | e9nguEk1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| MB [auth Cm] | Cofilin_ADF | e9nguCm1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| MC [auth Dm] | Cofilin_ADF | e9nguDm1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| O [auth Ao] | Cofilin_ADF | e9nguAo1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| OA [auth Bo] | Cofilin_ADF | e9nguBo1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| QC [auth Dq] | Cofilin_ADF | e9nguDq1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| QD [auth Eq] | Cofilin_ADF | e9nguEq1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| SA [auth Bs] | Cofilin_ADF | e9nguBs1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| SB [auth Cs] | Cofilin_ADF | e9nguCs1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| U [auth Au] | Cofilin_ADF | e9nguAu1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| UD [auth Eu] | Cofilin_ADF | e9nguEu1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| WB [auth Cw] | Cofilin_ADF | e9nguCw1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| WC [auth Dw] | Cofilin_ADF | e9nguDw1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| Y [auth Ay] | Cofilin_ADF | e9nguAy1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| YA [auth By] | Cofilin_ADF | e9nguBy1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| GD [auth Eg] | Cofilin_ADF | e9nguEg1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
| CC [auth Dc] | Cofilin_ADF | e9nguDc1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Cofilin_ADF | ECOD (v295) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| LphA (DotK) | - | - | ||
| Putative auto-transporter adhesin head GIN domain-containing protein | - | - | - | |
| Secreted protein | - | - | - | |
| DotC | - | - | - | |
| Outer membrane protein, OmpA family protein | - | - | ||
| IcmK (DotH) | - | - | - | |
| IcmG (DotF) | - | - | - | |
| Neurogenic locus notch protein homolog | - | - | - | |
| DotD | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006665 | OmpA-like domain | Domain | |
| IPR050330 | Bacterial Outer Membrane Structural/Functional | Family | |
| IPR036737 | OmpA-like domain superfamily | Homologous Superfamily | |
| IPR021255 | Putative auto-transporter adhesin, head GIN domain | Domain | |
| IPR031618 | Putative type IV secretory system protein | Family | |
| IPR006665 | OmpA-like domain | Domain | |
| IPR027367 | YMGG-like Gly-zipper | Domain | |
| IPR050330 | Bacterial Outer Membrane Structural/Functional | Family | |
| IPR036737 | OmpA-like domain superfamily | Homologous Superfamily | |
| IPR022073 | Putative outer membrane core complex of type IVb secretion | Family | |
| IPR038140 | DotD superfamily | Homologous Superfamily | |
| IPR031817 | DotD protein | Family |














