9NGU | pdb_00009ngu

In situ cryo-EM structure of outer membrane cap (OMC) of the Legionella Dot/Icm T4SS machine


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZB [auth Cz]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XD [auth Ex]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
VA [auth Bv]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
TC [auth Dt]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
R [auth Ar]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
PB [auth Cp]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
ND [auth En]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
LA [auth Bl]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
JC [auth Dj]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
H [auth Ah]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
FB [auth Cf]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
DD [auth Ed]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
BA [auth Bb]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
YA [auth By]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
Y [auth Ay]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
WC [auth Dw]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
WB [auth Cw]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
UD [auth Eu]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
U [auth Au]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
SB [auth Cs]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
SA [auth Bs]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
QD [auth Eq]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
QC [auth Dq]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
OA [auth Bo]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
O [auth Ao]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
MC [auth Dm]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
MB [auth Cm]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
KD [auth Ek]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
K [auth Ak]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
IB [auth Ci]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
IA [auth Bi]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
GD [auth Eg]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
GC [auth Dg]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
EA [auth Be]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
E [auth Ae]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
CC [auth Dc]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
CB [auth Cc]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
AD [auth Ea]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)
A [auth Aa]SCOP2B SuperfamilySTN domain-like 8090382 3002388 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZB [auth Cz]Cofilin_ADFe9nguCz1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
XD [auth Ex]Cofilin_ADFe9nguEx1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
VA [auth Bv]Cofilin_ADFe9nguBv1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
TC [auth Dt]Cofilin_ADFe9nguDt1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
R [auth Ar]Cofilin_ADFe9nguAr1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
PB [auth Cp]Cofilin_ADFe9nguCp1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
ND [auth En]Cofilin_ADFe9nguEn1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
LA [auth Bl]Cofilin_ADFe9nguBl1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
JC [auth Dj]Cofilin_ADFe9nguDj1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
H [auth Ah]Cofilin_ADFe9nguAh1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
FB [auth Cf]Cofilin_ADFe9nguCf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
DD [auth Ed]Cofilin_ADFe9nguEd1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
BA [auth Bb]Cofilin_ADFe9nguBb1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
ZA [auth Bz]Cofilin_ADFe9nguBz1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
XC [auth Dx]Cofilin_ADFe9nguDx1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
V [auth Av]Cofilin_ADFe9nguAv1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
TB [auth Ct]Cofilin_ADFe9nguCt1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
RD [auth Er]Cofilin_ADFe9nguEr1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
PA [auth Bp]Cofilin_ADFe9nguBp1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
NC [auth Dn]Cofilin_ADFe9nguDn1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
L [auth Al]Cofilin_ADFe9nguAl1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
JB [auth Cj]Cofilin_ADFe9nguCj1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
HD [auth Eh]Cofilin_ADFe9nguEh1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
FA [auth Bf]Cofilin_ADFe9nguBf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
DC [auth Dd]Cofilin_ADFe9nguDd1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
B [auth Ab]Cofilin_ADFe9nguAb1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
YA [auth By]Cofilin_ADFe9nguBy1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
Y [auth Ay]Cofilin_ADFe9nguAy1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
WC [auth Dw]Cofilin_ADFe9nguDw1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
WB [auth Cw]Cofilin_ADFe9nguCw1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
UD [auth Eu]Cofilin_ADFe9nguEu1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
U [auth Au]Cofilin_ADFe9nguAu1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
SB [auth Cs]Cofilin_ADFe9nguCs1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
SA [auth Bs]Cofilin_ADFe9nguBs1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
QD [auth Eq]Cofilin_ADFe9nguEq1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
QC [auth Dq]Cofilin_ADFe9nguDq1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
OA [auth Bo]Cofilin_ADFe9nguBo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
O [auth Ao]Cofilin_ADFe9nguAo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
MC [auth Dm]Cofilin_ADFe9nguDm1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
MB [auth Cm]Cofilin_ADFe9nguCm1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
KD [auth Ek]Cofilin_ADFe9nguEk1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
K [auth Ak]Cofilin_ADFe9nguAk1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
IB [auth Ci]Cofilin_ADFe9nguCi1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
IA [auth Bi]Cofilin_ADFe9nguBi1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
GD [auth Eg]Cofilin_ADFe9nguEg1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
GC [auth Dg]Cofilin_ADFe9nguDg1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
EA [auth Be]Cofilin_ADFe9nguBe1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
E [auth Ae]Cofilin_ADFe9nguAe1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
CC [auth Dc]Cofilin_ADFe9nguDc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
CB [auth Cc]Cofilin_ADFe9nguCc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
AD [auth Ea]Cofilin_ADFe9nguEa1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)
A [auth Aa]Cofilin_ADFe9nguAa1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: Cofilin_ADFECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Secreted protein- - -
DotC- - -
Outer membrane protein, OmpA family protein- -
IcmK (DotH)- - -
IcmG (DotF)- - -
Neurogenic locus notch protein homolog- - -
Putative auto-transporter adhesin head GIN domain-containing protein- - -
LphA (DotK)- -
DotD- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR031618Putative type IV secretory system proteinFamily
IPR006665OmpA-like domainDomain
IPR027367YMGG-like Gly-zipperDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR022073Putative outer membrane core complex of type IVb secretionFamily
IPR021255Putative auto-transporter adhesin, head GIN domainDomain
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily