9NGU | pdb_00009ngu

In situ cryo-EM structure of outer membrane cap (OMC) of the Legionella Dot/Icm T4SS machine

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZB [auth Cz]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
XD [auth Ex]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
VA [auth Bv]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
TC [auth Dt]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
R [auth Ar]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
PB [auth Cp]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
ND [auth En]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
LA [auth Bl]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
JC [auth Dj]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
H [auth Ah]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
FB [auth Cf]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
DD [auth Ed]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
BA [auth Bb]	SCOP2B Superfamily	OmpA-like	8074167	3001650	SCOP2B (2022-06-29)
YA [auth By]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
Y [auth Ay]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
WC [auth Dw]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
WB [auth Cw]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
UD [auth Eu]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
U [auth Au]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
SB [auth Cs]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
SA [auth Bs]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
QD [auth Eq]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
QC [auth Dq]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
OA [auth Bo]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
O [auth Ao]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
MC [auth Dm]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
MB [auth Cm]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
KD [auth Ek]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
K [auth Ak]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
IB [auth Ci]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
IA [auth Bi]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
GD [auth Eg]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
GC [auth Dg]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
EA [auth Be]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
E [auth Ae]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
CC [auth Dc]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
CB [auth Cc]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
AD [auth Ea]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)
A [auth Aa]	SCOP2B Superfamily	STN domain-like	8090382	3002388	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BC [auth Db], DA [auth Bd], FD [auth Ef], HB [auth Ch], J [auth Aj], BC [auth Db], DA [auth Bd], FD [auth Ef], HB [auth Ch], J [auth Aj], LC [auth Dl], NA [auth Bn], PD [auth Ep], RB [auth Cr], T [auth At], VC [auth Dv], XA [auth Bx], ZD [auth Ez]	Secreted protein	-	-	-
AC [auth Da], CA [auth Bc], ED [auth Ee], GB [auth Cg], I [auth Ai], AC [auth Da], CA [auth Bc], ED [auth Ee], GB [auth Cg], I [auth Ai], KC [auth Dk], MA [auth Bm], OD [auth Eo], QB [auth Cq], S [auth As], UC [auth Du], WA [auth Bw], YD [auth Ey]	DotC	-	-	-
BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], LA [auth Bl], ND [auth En], PB [auth Cp], R [auth Ar], TC [auth Dt], VA [auth Bv], XD [auth Ex], ZB [auth Cz]	Outer membrane protein, OmpA family protein	-	-	cellular anatomical structure membrane
AA [auth Ba], CD [auth Ec], EB [auth Ce], G [auth Ag], IC [auth Di], AA [auth Ba], CD [auth Ec], EB [auth Ce], G [auth Ag], IC [auth Di], KA [auth Bk], MD [auth Em], OB [auth Co], Q [auth Aq], SC [auth Ds], UA [auth Bu], WD [auth Ew], YB [auth Cy]	IcmK (DotH)	-	-	-
BD [auth Eb], DB [auth Cd], F [auth Af], HC [auth Dh], JA [auth Bj], BD [auth Eb], DB [auth Cd], F [auth Af], HC [auth Dh], JA [auth Bj], LD [auth El], NB [auth Cn], P [auth Ap], RC [auth Dr], TA [auth Bt], VD [auth Ev], XB [auth Cx], Z [auth Az]	IcmG (DotF)	-	-	cellular anatomical structure membrane
BB [auth Cb], D [auth Ad], FC [auth Df], HA [auth Bh], JD [auth Ej], BB [auth Cb], D [auth Ad], FC [auth Df], HA [auth Bh], JD [auth Ej], LB [auth Cl], N [auth An], PC [auth Dp], RA [auth Br], TD [auth Et], VB [auth Cv], X [auth Ax], ZC [auth Dz]	Neurogenic locus notch protein homolog	-	-	-
AB [auth Ca], C [auth Ac], EC [auth De], GA [auth Bg], ID [auth Ei], AB [auth Ca], C [auth Ac], EC [auth De], GA [auth Bg], ID [auth Ei], KB [auth Ck], M [auth Am], OC [auth Do], QA [auth Bq], SD [auth Es], UB [auth Cu], W [auth Aw], YC [auth Dy]	Putative auto-transporter adhesin head GIN domain-containing protein	-	-	-
B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], L [auth Al], NC [auth Dn], PA [auth Bp], RD [auth Er], TB [auth Ct], V [auth Av], XC [auth Dx], ZA [auth Bz]	LphA (DotK)	-	-	cellular anatomical structure membrane
A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], EA [auth Be], GC [auth Dg], GD [auth Eg], IA [auth Bi], IB [auth Ci], K [auth Ak], KD [auth Ek], MB [auth Cm], MC [auth Dm], O [auth Ao], OA [auth Bo], QC [auth Dq], QD [auth Eq], SA [auth Bs], SB [auth Cs], U [auth Au], UD [auth Eu], WB [auth Cw], WC [auth Dw], Y [auth Ay], YA [auth By]	DotD	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AC [auth Da], CA [auth Bc], ED [auth Ee], GB [auth Cg], I [auth Ai], AC [auth Da], CA [auth Bc], ED [auth Ee], GB [auth Cg], I [auth Ai], KC [auth Dk], MA [auth Bm], OD [auth Eo], QB [auth Cq], S [auth As], UC [auth Du], WA [auth Bw], YD [auth Ey]	IPR031618	Putative type IV secretory system protein	Family
BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], LA [auth Bl], ND [auth En], PB [auth Cp], R [auth Ar], TC [auth Dt], VA [auth Bv], XD [auth Ex], ZB [auth Cz]	IPR006665	OmpA-like domain	Domain
BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], LA [auth Bl], ND [auth En], PB [auth Cp], R [auth Ar], TC [auth Dt], VA [auth Bv], XD [auth Ex], ZB [auth Cz]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], BA [auth Bb], DD [auth Ed], FB [auth Cf], H [auth Ah], JC [auth Dj], LA [auth Bl], ND [auth En], PB [auth Cp], R [auth Ar], TC [auth Dt], VA [auth Bv], XD [auth Ex], ZB [auth Cz]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
AA [auth Ba], CD [auth Ec], EB [auth Ce], G [auth Ag], IC [auth Di], AA [auth Ba], CD [auth Ec], EB [auth Ce], G [auth Ag], IC [auth Di], KA [auth Bk], MD [auth Em], OB [auth Co], Q [auth Aq], SC [auth Ds], UA [auth Bu], WD [auth Ew], YB [auth Cy]	IPR022073	Putative outer membrane core complex of type IVb secretion	Family
AB [auth Ca], C [auth Ac], EC [auth De], GA [auth Bg], ID [auth Ei], AB [auth Ca], C [auth Ac], EC [auth De], GA [auth Bg], ID [auth Ei], KB [auth Ck], M [auth Am], OC [auth Do], QA [auth Bq], SD [auth Es], UB [auth Cu], W [auth Aw], YC [auth Dy]	IPR021255	Putative auto-transporter adhesin, head GIN domain	Domain
B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], L [auth Al], NC [auth Dn], PA [auth Bp], RD [auth Er], TB [auth Ct], V [auth Av], XC [auth Dx], ZA [auth Bz]	IPR006665	OmpA-like domain	Domain
B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], L [auth Al], NC [auth Dn], PA [auth Bp], RD [auth Er], TB [auth Ct], V [auth Av], XC [auth Dx], ZA [auth Bz]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], B [auth Ab], DC [auth Dd], FA [auth Bf], HD [auth Eh], JB [auth Cj], L [auth Al], NC [auth Dn], PA [auth Bp], RD [auth Er], TB [auth Ct], V [auth Av], XC [auth Dx], ZA [auth Bz]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], EA [auth Be], GC [auth Dg], GD [auth Eg], IA [auth Bi], IB [auth Ci], K [auth Ak], KD [auth Ek], MB [auth Cm], MC [auth Dm], O [auth Ao], OA [auth Bo], QC [auth Dq], QD [auth Eq], SA [auth Bs], SB [auth Cs], U [auth Au], UD [auth Eu], WB [auth Cw], WC [auth Dw], Y [auth Ay], YA [auth By]	IPR038140	DotD superfamily	Homologous Superfamily
A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], A [auth Aa], AD [auth Ea], CB [auth Cc], CC [auth Dc], E [auth Ae], EA [auth Be], GC [auth Dg], GD [auth Eg], IA [auth Bi], IB [auth Ci], K [auth Ak], KD [auth Ek], MB [auth Cm], MC [auth Dm], O [auth Ao], OA [auth Bo], QC [auth Dq], QD [auth Eq], SA [auth Bs], SB [auth Cs], U [auth Au], UD [auth Eu], WB [auth Cw], WC [auth Dw], Y [auth Ay], YA [auth By]	IPR031817	DotD protein	Family