9MKB | pdb_00009mkb

Structure of the bacteriophage T4 portal-neck-tail complex


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
gp14, neck protein- -
gp18, tail sheath protein-
gp19, tail tube protein - -
gpwac, fibritin- -
gp20, portal protein-
gp13, neck protein- -
gp15, tail terminator protein- - -
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
Hoc, highly immunogenic outer capsid protein- -
Soc, small outer capsid protein- -
gp12, short tail fiber protein
gp9, baseplate wedge tail fiber connector- -
gp11, baseplate wedge protein- - -
gp10, baseplate wedge protein-
gp7, baseplate wedge protein-
gp8, baseplate wedge protein- - -
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
gp5, baseplate central spike protein
IR [auth iC],
JR [auth iD],
KR [auth iF]
gp27, baseplate hub protein- -
MR [auth ja],
NR [auth jb],
OR [auth jc]
gp29, tape measure protein-
gp53, baseplate wedge protein- - -
gp48, baseplate protein- - -
gp54, baseplate protein-
unassigned peptide A---
CT [auth sQ],
DT [auth sT],
ET [auth sU]
unassigned peptide B---
GT [auth tS],
HT [auth tX],
IT [auth tY]
unassigned peptide C---
KT [auth uR],
LT [auth uV],
MT [auth uW]
unassigned peptide D---
OT [auth vZ],
PT [auth va],
QT [auth vb]
unassigned peptide E---
gp3, tube terminator protein - -
gp23, major capsid protein- -
gp25, baseplate protein- - -
BQ [auth gd]gp5.4, tip of the central spike- - -
gp6, baseplate wedge protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR021674Bacteriophage T4, Gp14, neck proteinFamily
IPR052042Tail sheath structural proteinFamily
IPR054565Tail sheath protein Gp18-like, domain IDomain
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR035326Phage tail sheath protein-like, beta-sandwich domainDomain
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR012473Fibritin C-terminalDomain
IPR010823Portal protein Gp20Family
IPR031997Myoviridae tail sheath stabiliserFamily
IPR038553Myoviridae tail sheath stabiliser superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR038998Highly immunogenic outer capsid proteinFamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR035986PKD domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR013783Immunoglobulin-like foldHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR022409PKD/Chitinase domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR000601PKD domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR007110Immunoglobulin-like domainDomain
IPR038151Small outer capsid protein superfamilyHomologous Superfamily
IPR031743Small outer capsid proteinFamily
IPR037053Phage tail collar domain superfamilyHomologous Superfamily
IPR027448Short tail fibre protein, C-terminalDomain
IPR044916Short tail fibre protein, C-terminal superfamilyHomologous Superfamily
IPR015173Bacteriophage T4, Gp12Domain
IPR011083Phage tail collar domainDomain
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR027412Baseplate structural protein Gp9 C-terminal domain superfamilyHomologous Superfamily
IPR056391Baseplate protein gp9-like, C-terminalDomain
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR015982Baseplate structural protein Gp11, N-terminal domain superfamilyHomologous Superfamily
IPR015976Bacteriophage T4, Gp11, C-terminal finger domainHomologous Superfamily
IPR043180Baseplate structural protein Gp11, C-terminal domainHomologous Superfamily
IPR014791Baseplate structural protein Gp11Family
IPR036214Baseplate structural protein Gp11 superfamilyHomologous Superfamily
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR054430Baseplate wedge protein gp10, domain 3Domain
IPR056391Baseplate protein gp9-like, C-terminalDomain
IPR053827Baseplate structural protein Gp10, C-terminal domainDomain
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR034695Baseplate wedge protein gp10Family
IPR034697Baseplate wedge protein gp7Family
IPR048812Baseplate wedge protein gp7, domain VIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR048810Baseplate wedge protein gp7, helical domainDomain
IPR003961Fibronectin type IIIDomain
IPR048811Baseplate wedge protein gp7, domain VDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR036327Bacteriophage T4, Gp8 superfamilyHomologous Superfamily
IPR015298Bacteriophage T4, Gp8Domain
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR052619Bacteriophage lysozyme-likeFamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR009590Protein Gp5, N-terminal OB-fold domainDomain
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR023347Lysozyme domain superfamilyHomologous Superfamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR023346Lysozyme-like domain superfamilyHomologous Superfamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR046397Pre-baseplate central spike protein Gp5Family
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR001165T4-type lysozymeFamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR010609Gp5, C-terminalRepeat
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR002196Glycoside hydrolase, family 24Family
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR015180Bacteriophage T4, Gp27, baseplate hub, C-terminalDomain
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043084Gp27, baseplate hub, domain 4Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043083Gp27, baseplate hub, domain 3Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043085Gp27, baseplate hub, domain 2Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR015181Bacteriophage T4, Gp27, baseplate hub, N-terminalDomain
IPR022607Baseplate wedge protein gp53, bacteriophage T4Family
IPR024389Baseplate tail-tube protein gp48, T4-like virusFamily
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR010762Capsid protein, T4-like bacteriophage-likeFamily
IPR038997Major capsid protein, MyoviridaeFamily
IPR007048IraD/Gp25-likeDomain
BQ [auth gd]IPR008727PAAR motifRepeat
IPR054065Baseplate wedge protein gp6, C-terminal domain IIIDomain
IPR034698Baseplate wedge protein gp6Family
IPR049027Baseplate structural protein gp6, C-terminal domain IDomain
IPR049026Baseplate wedge protein gp6-like, N-terminal helical domainDomain
IPR049028Baseplate structural protein gp6, C-terminal domain IIDomain
IPR049029Baseplate wedge protein gp6, domain II, firstDomain