9MKB | pdb_00009mkb

Structure of the bacteriophage T4 portal-neck-tail complex


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
gp48, baseplate protein- - -
gp3, tube terminator protein - -
gp15, tail terminator protein- - -
gp13, neck protein- -
gp23, major capsid protein- -
gp20, portal protein-
gpwac, fibritin- -
OT [auth vZ],
PT [auth va],
QT [auth vb]
unassigned peptide E---
KT [auth uR],
LT [auth uV],
MT [auth uW]
unassigned peptide D---
gp19, tail tube protein - -
GT [auth tS],
HT [auth tX],
IT [auth tY]
unassigned peptide C---
CT [auth sQ],
DT [auth sT],
ET [auth sU]
unassigned peptide B---
unassigned peptide A---
gp54, baseplate protein-
gp25, baseplate protein- - -
gp53, baseplate wedge protein- - -
MR [auth ja],
NR [auth jb],
OR [auth jc]
gp29, tape measure protein-
IR [auth iC],
JR [auth iD],
KR [auth iF]
gp27, baseplate hub protein- -
BQ [auth gd]gp5.4, tip of the central spike- - -
gp18, tail sheath protein-
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
gp5, baseplate central spike protein
gp6, baseplate wedge protein
gp8, baseplate wedge protein- - -
gp7, baseplate wedge protein-
gp10, baseplate wedge protein-
gp11, baseplate wedge protein- - -
gp9, baseplate wedge tail fiber connector- -
gp12, short tail fiber protein
Soc, small outer capsid protein- -
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
Hoc, highly immunogenic outer capsid protein- -
gp14, neck protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR024389Baseplate tail-tube protein gp48, T4-like virusFamily
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR031997Myoviridae tail sheath stabiliserFamily
IPR038553Myoviridae tail sheath stabiliser superfamilyHomologous Superfamily
IPR010762Capsid protein, T4-like bacteriophage-likeFamily
IPR038997Major capsid protein, MyoviridaeFamily
IPR010823Portal protein Gp20Family
IPR012473Fibritin C-terminalDomain
IPR010667Bacteriophage T4, Gp19, tail tubeFamily
IPR007048IraD/Gp25-likeDomain
IPR022607Baseplate wedge protein gp53, bacteriophage T4Family
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR015180Bacteriophage T4, Gp27, baseplate hub, C-terminalDomain
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043084Gp27, baseplate hub, domain 4Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043083Gp27, baseplate hub, domain 3Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043085Gp27, baseplate hub, domain 2Homologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
IR [auth iC],
JR [auth iD],
KR [auth iF]
IPR015181Bacteriophage T4, Gp27, baseplate hub, N-terminalDomain
BQ [auth gd]IPR008727PAAR motifRepeat
IPR052042Tail sheath structural proteinFamily
IPR054565Tail sheath protein Gp18-like, domain IDomain
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR035326Phage tail sheath protein-like, beta-sandwich domainDomain
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR052619Bacteriophage lysozyme-likeFamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR009590Protein Gp5, N-terminal OB-fold domainDomain
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR023347Lysozyme domain superfamilyHomologous Superfamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR023346Lysozyme-like domain superfamilyHomologous Superfamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR046397Pre-baseplate central spike protein Gp5Family
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR001165T4-type lysozymeFamily
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR010609Gp5, C-terminalRepeat
AQ [auth gH],
YP [auth gE],
ZP [auth gG]
IPR002196Glycoside hydrolase, family 24Family
IPR054065Baseplate wedge protein gp6, C-terminal domain IIIDomain
IPR034698Baseplate wedge protein gp6Family
IPR049027Baseplate structural protein gp6, C-terminal domain IDomain
IPR049026Baseplate wedge protein gp6-like, N-terminal helical domainDomain
IPR049028Baseplate structural protein gp6, C-terminal domain IIDomain
IPR049029Baseplate wedge protein gp6, domain II, firstDomain
IPR036327Bacteriophage T4, Gp8 superfamilyHomologous Superfamily
IPR015298Bacteriophage T4, Gp8Domain
IPR034697Baseplate wedge protein gp7Family
IPR048812Baseplate wedge protein gp7, domain VIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR048810Baseplate wedge protein gp7, helical domainDomain
IPR003961Fibronectin type IIIDomain
IPR048811Baseplate wedge protein gp7, domain VDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR054430Baseplate wedge protein gp10, domain 3Domain
IPR056391Baseplate protein gp9-like, C-terminalDomain
IPR053827Baseplate structural protein Gp10, C-terminal domainDomain
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR034695Baseplate wedge protein gp10Family
IPR015982Baseplate structural protein Gp11, N-terminal domain superfamilyHomologous Superfamily
IPR015976Bacteriophage T4, Gp11, C-terminal finger domainHomologous Superfamily
IPR043180Baseplate structural protein Gp11, C-terminal domainHomologous Superfamily
IPR014791Baseplate structural protein Gp11Family
IPR036214Baseplate structural protein Gp11 superfamilyHomologous Superfamily
IPR036240Gp9-like superfamilyHomologous Superfamily
IPR008987Baseplate structural protein Gp9/Gp10, N-terminal domainDomain
IPR027412Baseplate structural protein Gp9 C-terminal domain superfamilyHomologous Superfamily
IPR056391Baseplate protein gp9-like, C-terminalDomain
IPR027411Baseplate structural protein Gp9/Gp10 middle domain superfamilyHomologous Superfamily
IPR037053Phage tail collar domain superfamilyHomologous Superfamily
IPR027448Short tail fibre protein, C-terminalDomain
IPR044916Short tail fibre protein, C-terminal superfamilyHomologous Superfamily
IPR015173Bacteriophage T4, Gp12Domain
IPR011083Phage tail collar domainDomain
IPR038151Small outer capsid protein superfamilyHomologous Superfamily
IPR031743Small outer capsid proteinFamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR038998Highly immunogenic outer capsid proteinFamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR035986PKD domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR013783Immunoglobulin-like foldHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR022409PKD/Chitinase domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR000601PKD domainDomain
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
LA [auth AQ],
MA [auth AR],
NA [auth AS],
OA [auth AT],
PA [auth AU]
IPR007110Immunoglobulin-like domainDomain
IPR021674Bacteriophage T4, Gp14, neck proteinFamily