9KQP | pdb_00009kqp

PSI-LHCI supercomplex binding with 10 Lhcas from C. subellipsoidea


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BU6-snRNA_bdg,U5_2-snRNA_bdge9kqpB01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
CU6-snRNA_bdg,U5_2-snRNA_bdge9kqpC01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
DU6-snRNA_bdg,U5_2-snRNA_bdge9kqpD01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
EU6-snRNA_bdg,U5_2-snRNA_bdge9kqpE01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
FU6-snRNA_bdg,U5_2-snRNA_bdge9kqpF01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
GU6-snRNA_bdg,U5_2-snRNA_bdge9kqpG01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
HU6-snRNA_bdg,U5_2-snRNA_bdge9kqpH01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
IU6-snRNA_bdg,U5_2-snRNA_bdge9kqpI01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
KU6-snRNA_bdg,U5_2-snRNA_bdge9kqpK01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
L [auth M]U6-snRNA_bdg,U5_2-snRNA_bdge9kqpM01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
M [auth a]U6-snRNA_bdg,U5_2-snRNA_bdge9kqpa01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
N [auth 3]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp301 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
O [auth 7]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp701 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
P [auth 8]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp801 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
Q [auth 9]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp901 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
R [auth L]U6-snRNA_bdg,U5_2-snRNA_bdge9kqpL01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
V [auth 4]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp401 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
W [auth 5]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp501 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
X [auth 6]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp601 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
U [auth 2]U6-snRNA_bdg,U5_2-snRNA_bdge9kqp201 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)
JU6-snRNA_bdg,U5_2-snRNA_bdge9kqpJ01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: U6-snRNA_bdg,U5_2-snRNA_bdgECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF02531PsaD (PsaD)PsaD- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
L [auth M]PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
O [auth 7]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 8]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 9]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
R [auth L]PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
V [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
X [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
U [auth 2]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
Photosystem I reaction center subunit II, chloroplastic
Photosystem I reaction centre subunit IV/PsaE-
Photosystem I reaction center subunit III-
Photosystem I reaction center subunit V, chloroplastic-
Photosystem I reaction centre subunit VI-
Photosystem I reaction center subunit VIII-
PSI-K-
L [auth M]Photosystem I reaction center subunit XII-
M [auth a],
T [auth b]
Chlorophyll a-b binding protein, chloroplastic
N [auth 3]Chlorophyll a-b binding protein, chloroplastic
O [auth 7]Chlorophyll a-b binding protein, chloroplastic
P [auth 8]Chlorophyll a-b binding protein, chloroplastic
Q [auth 9]Chlorophyll a-b binding protein, chloroplastic
R [auth L]PSI subunit V-
S [auth O]Photosystem I PsaO- - -
V [auth 4]Chlorophyll a-b binding protein, chloroplastic
W [auth 5]Chlorophyll a-b binding protein, chloroplastic
X [auth 6]Chlorophyll a-b binding protein, chloroplastic
U [auth 2]Chlorophyll a-b binding protein, chloroplastic/Lhca2
Photosystem I reaction center subunit IX-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
L [auth M]IPR010010Photosystem I PsaM, reaction centreFamily
L [auth M]IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
M [auth a],
T [auth b]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
M [auth a],
T [auth b]
IPR022796Chlorophyll A-B binding proteinFamily
N [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
O [auth 7]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 7]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
R [auth L]IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
R [auth L]IPR022980Photosystem I, reaction centre subunit XIFamily
R [auth L]IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
S [auth O]IPR017498Photosystem I PsaOFamily
V [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
W [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
X [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
X [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
U [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage