9JMB | pdb_00009jmb

Cryo-EM structure of HSV-2 gB and FAB 16F9 complex

External Resource: Annotation


SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth L]Light ChainIGKV4 Kappaglycoprotein bSAbDab (2025-12-19)
B [auth H]Heavy ChainIGHV1 -glycoprotein bSAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00606Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B)Herpesvirus Glycoprotein B ectodomainThis domain corresponds to the ectodomain of glycoprotein B according to ECOD. Domain
PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth L]16F9 VL---
B [auth H]16F9 VH---
Glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000234Herpesvirus Glycoprotein BFamily
IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily