9HM0 | pdb_00009hm0

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 2]Small ribosomal subunit protein mS41
K [auth C]Small ribosomal subunit protein uS3m
L [auth D]Small ribosomal subunit protein uS4m
R [auth J]Small ribosomal subunit protein uS10m
S [auth K]Small ribosomal subunit protein uS11m
T [auth L]Small ribosomal subunit protein uS12m
U [auth M]Small ribosomal subunit protein uS13m
X [auth P]Small ribosomal subunit protein bS16m
BA [auth T]Small ribosomal subunit protein bS21m
FA [auth Y]Small ribosomal subunit protein mS35
HA [auth a]ATPase expression protein 3
MA [auth 33]Large ribosomal subunit protein mL41
QA [auth 77]Large ribosomal subunit protein mL49
RA [auth 88]Large ribosomal subunit protein mL50
UA [auth BB]Large ribosomal subunit protein uL2m
XA [auth EE]Large ribosomal subunit protein uL5m
ZA [auth GG]Large ribosomal subunit protein bL9m
BB [auth II]Large ribosomal subunit protein uL14m
DB [auth KK]Large ribosomal subunit protein uL16m
MB [auth TT]Large ribosomal subunit protein uL29m
QB [auth WW]Large ribosomal subunit protein bL32m
SB [auth YY]Large ribosomal subunit protein bL34m
VB [auth bb]Large ribosomal subunit protein mL59
XB [auth dd]Large ribosomal subunit protein mL67
YB [auth r]15S mitochondrial rRNA---
I [auth A]Small ribosomal subunit protein bS1m
H [auth 8]Small ribosomal subunit protein mS47
WB [auth cc]Large ribosomal subunit protein mL60
UB [auth aa]Large ribosomal subunit protein mL58
TB [auth ZZ]Large ribosomal subunit protein bL35m
RB [auth XX]Large ribosomal subunit protein bL33m
G [auth 7]Small ribosomal subunit protein mS46
PB [auth VV]Large ribosomal subunit protein bL31m
OB [auth V]Small ribosomal subunit protein mS26
NB [auth UU]Large ribosomal subunit protein uL30m
LB [auth SS]Large ribosomal subunit protein bL28m
KB [auth RR]Large ribosomal subunit protein bL27m
JB [auth QQ]Large ribosomal subunit protein uL24m
IB [auth PP]Large ribosomal subunit protein uL23m---
HB [auth OO]Large ribosomal subunit protein uL22m
F [auth 6]Small ribosomal subunit protein mS45
GB [auth NN]Large ribosomal subunit protein bL21m
FB [auth MM]Large ribosomal subunit protein bL19m
EB [auth LL]Large ribosomal subunit protein bL17m
CB [auth JJ]Large ribosomal subunit protein uL15m
AB [auth HH]Large ribosomal subunit protein uL13m
YA [auth FF]Large ribosomal subunit protein uL6m
E [auth 5]Small ribosomal subunit protein mS27
WA [auth DD]Large ribosomal subunit protein uL4m
VA [auth CC]Large ribosomal subunit protein uL3m
TA [auth AA]21S mitochondrial rRNA---
SA [auth 99]Large ribosomal subunit protein mL57
PA [auth 66]Large ribosomal subunit protein mL46
OA [auth 55]Large ribosomal subunit protein mL44
NA [auth 44]Large ribosomal subunit protein mL43
D [auth 4]Small ribosomal subunit protein mS43
LA [auth 22]Large ribosomal subunit protein mL40
KA [auth 11]Large ribosomal subunit protein mL38
JA [auth 00]Large ribosomal subunit protein bL36m
IA [auth t]E/E-site formyl-methionine tRNA---
GA [auth Z]Small ribosomal subunit protein mS37
EA [auth X]Small ribosomal subunit protein mS33
DA [auth W]Small ribosomal subunit protein mS29
C [auth 3]Small ribosomal subunit protein mS42
CA [auth U]Small ribosomal subunit protein mS23
AA [auth S]Small ribosomal subunit protein uS19m
Z [auth R]Small ribosomal subunit protein bS18m
Y [auth Q]Small ribosomal subunit protein uS17m
W [auth O]Small ribosomal subunit protein uS15m
V [auth N]Small ribosomal subunit protein uS14m
Q [auth I]Small ribosomal subunit protein uS9m
P [auth H]Small ribosomal subunit protein uS8m
O [auth G]Small ribosomal subunit protein uS7m
N [auth F]Small ribosomal subunit protein bS6m
M [auth E]Small ribosomal subunit protein uS5m
J [auth B]Small ribosomal subunit protein uS2m
A [auth 1]Small ribosomal subunit protein mS38

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 2]IPR019083Small ribosomal subunit protein mS41, SAM domainDomain
B [auth 2]IPR039603Small ribosomal subunit protein mS41Family
K [auth C]IPR007980Small ribosomal subunit protein uS3m, fungiFamily
L [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
L [auth D]IPR002942RNA-binding S4 domainDomain
L [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
L [auth D]IPR022801Small ribosomal subunit protein uS4Family
R [auth J]IPR001848Small ribosomal subunit protein uS10Family
R [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
R [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
S [auth K]IPR001971Small ribosomal subunit protein uS11Family
S [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
T [auth L]IPR006032Small ribosomal subunit protein uS12Family
T [auth L]IPR005679Ribosomal protein uS12, bacteriaFamily
T [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
U [auth M]IPR001892Small ribosomal subunit protein uS13Family
U [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
U [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
X [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
X [auth P]IPR000307Small ribosomal subunit protein bS16Family
X [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
BA [auth T]IPR052837Mitochondrial ribosomal protein bS21Family
BA [auth T]IPR001911Small ribosomal subunit protein bS21Family
FA [auth Y]IPR017081Small ribosomal subunit protein mS35Family
FA [auth Y]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
FA [auth Y]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
HA [auth a]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
HA [auth a]IPR050667Pentatricopeptide repeat-containing proteinFamily
HA [auth a]IPR002885Pentatricopeptide repeatRepeat
MA [auth 33]IPR019189Large ribosomal subunit protein mL41Family
QA [auth 77]IPR007740Large ribosomal subunit protein mL49Family
RA [auth 88]IPR036736ACP-like superfamilyHomologous Superfamily
RA [auth 88]IPR018305Large ribosomal subunit protein mL50Family
UA [auth BB]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
UA [auth BB]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
UA [auth BB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
UA [auth BB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
UA [auth BB]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
UA [auth BB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth BB]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
UA [auth BB]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
UA [auth BB]IPR002171Large ribosomal subunit protein uL2Family
XA [auth EE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
XA [auth EE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
XA [auth EE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
XA [auth EE]IPR002132Large ribosomal subunit protein uL5Family
ZA [auth GG]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
BB [auth II]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BB [auth II]IPR000218Large ribosomal subunit protein uL14Family
BB [auth II]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
BB [auth II]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
DB [auth KK]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
DB [auth KK]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
DB [auth KK]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
DB [auth KK]IPR016180Large ribosomal subunit protein uL16 domainDomain
DB [auth KK]IPR047873Large ribosomal subunit protein uL16Family
MB [auth TT]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
MB [auth TT]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
QB [auth WW]IPR002677Large ribosomal subunit protein bL32Family
QB [auth WW]IPR051991Mitochondrial ribosomal protein bL32Family
QB [auth WW]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SB [auth YY]IPR000271Large ribosomal subunit protein bL34Family
VB [auth bb]IPR040922Large ribosomal subunit protein mL59 domainDomain
VB [auth bb]IPR037507Large ribosomal subunit protein mL59Family
XB [auth dd]IPR024629Large ribosomal subunit protein mL67Family
I [auth A]IPR016712Small ribosomal subunit protein bS1m-likeFamily
H [auth 8]IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
H [auth 8]IPR032259Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H typeFamily
H [auth 8]IPR045004Enoyl-CoA hydratase/isomerase domainDomain
H [auth 8]IPR018376Enoyl-CoA hydratase/isomerase, conserved siteConserved Site
WB [auth cc]IPR016340Large ribosomal subunit protein mL60Family
UB [auth aa]IPR024388Large ribosomal subunit protein mL58Family
TB [auth ZZ]IPR021137Large ribosomal subunit protein bL35-likeFamily
TB [auth ZZ]IPR001706Large ribosomal subunit protein bL35Family
TB [auth ZZ]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
RB [auth XX]IPR052008Mitochondrial ribosomal protein bL33Family
RB [auth XX]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth XX]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
RB [auth XX]IPR001705Large ribosomal subunit protein bL33Family
PB [auth VV]IPR034600Large ribosomal subunit protein bL31mFamily
PB [auth VV]IPR048874Ribosomal protein bL31m, N-terminal domainDomain
NB [auth UU]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NB [auth UU]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
NB [auth UU]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
NB [auth UU]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
LB [auth SS]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
LB [auth SS]IPR026569Large ribosomal subunit protein bL28Family
LB [auth SS]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
KB [auth RR]IPR001684Large ribosomal subunit protein bL27Family
KB [auth RR]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
KB [auth RR]IPR041244Large ribosomal subunit protein bL27m, C-terminalDomain
JB [auth QQ]IPR003256Large ribosomal subunit protein uL24Family
JB [auth QQ]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
JB [auth QQ]IPR005824KOWDomain
JB [auth QQ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JB [auth QQ]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
HB [auth OO]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
HB [auth OO]IPR001063Large ribosomal subunit protein uL22Family
HB [auth OO]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
F [auth 6]IPR021036Small ribosomal subunit protein mS45Family
GB [auth NN]IPR028909Large ribosomal subunit protein bL21-likeFamily
GB [auth NN]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
FB [auth MM]IPR001857Large ribosomal subunit protein bL19Family
FB [auth MM]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
FB [auth MM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EB [auth LL]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
EB [auth LL]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
EB [auth LL]IPR000456Large ribosomal subunit protein bL17Family
EB [auth LL]IPR040894Large ribosomal subunit protein bL17m, C-terminal, fungiDomain
CB [auth JJ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CB [auth JJ]IPR030878Large ribosomal subunit protein uL15Family
CB [auth JJ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CB [auth JJ]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
AB [auth HH]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AB [auth HH]IPR005822Large ribosomal subunit protein uL13Family
AB [auth HH]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
AB [auth HH]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
YA [auth FF]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
YA [auth FF]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
YA [auth FF]IPR000702Large ribosomal subunit protein uL6-likeFamily
YA [auth FF]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
YA [auth FF]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
WA [auth DD]IPR013005Large ribosomal subunit protein uL4-likeFamily
WA [auth DD]IPR002136Large ribosomal subunit protein uL4Family
WA [auth DD]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
VA [auth CC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
VA [auth CC]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
VA [auth CC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
VA [auth CC]IPR000597Large ribosomal subunit protein uL3Family
SA [auth 99]IPR040030Large ribosomal subunit protein mL57Family
SA [auth 99]IPR000999Ribonuclease III domainDomain
SA [auth 99]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
PA [auth 66]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
PA [auth 66]IPR040008Large ribosomal subunit protein mL46Family
PA [auth 66]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
OA [auth 55]IPR044443Large ribosomal subunit protein mL44, dsRNA binding domain, fungiDomain
OA [auth 55]IPR000999Ribonuclease III domainDomain
OA [auth 55]IPR014720Double-stranded RNA-binding domainDomain
OA [auth 55]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
NA [auth 44]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
NA [auth 44]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
NA [auth 44]IPR039927Large ribosomal subunit protein mL43Family
D [auth 4]IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
LA [auth 22]IPR042831Large ribosomal subunit protein mL40, fungiFamily
LA [auth 22]IPR019192Large ribosomal subunit protein mL40Family
KA [auth 11]IPR036610PEBP-like superfamilyHomologous Superfamily
KA [auth 11]IPR008914Phosphatidylethanolamine-binding proteinFamily
KA [auth 11]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
JA [auth 00]IPR000473Large ribosomal subunit protein bL36Family
JA [auth 00]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
JA [auth 00]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
GA [auth Z]IPR010625CHCHDomain
GA [auth Z]IPR017264Small ribosomal subunit protein mS37, fungal-typeFamily
EA [auth X]IPR013219Small ribosomal subunit protein mS33Family
DA [auth W]IPR017082Small ribosomal subunit protein mS29, fungalFamily
DA [auth W]IPR019368Small ribosomal subunit protein mS29Family
DA [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 3]IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilyHomologous Superfamily
C [auth 3]IPR019832Manganese/iron superoxide dismutase, C-terminalDomain
C [auth 3]IPR036314Manganese/iron superoxide dismutase, C-terminal domain superfamilyHomologous Superfamily
CA [auth U]IPR016939Small ribosomal subunit protein mS23, fungiFamily
AA [auth S]IPR002222Small ribosomal subunit protein uS19Family
AA [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
AA [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Z [auth R]IPR001648Small ribosomal subunit protein bS18Family
Z [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Y [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Y [auth Q]IPR000266Small ribosomal subunit protein uS17Family
W [auth O]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
W [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
W [auth O]IPR000589Small ribosomal subunit protein uS15Family
V [auth N]IPR001209Small ribosomal subunit protein uS14Family
V [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
Q [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Q [auth I]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
Q [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Q [auth I]IPR000754Small ribosomal subunit protein uS9Family
Q [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
P [auth H]IPR000630Small ribosomal subunit protein uS8Family
P [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
O [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
O [auth G]IPR047988Small ribosomal subunit protein uS7m, fungiDomain
O [auth G]IPR000235Small ribosomal subunit protein uS7Family
O [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
N [auth F]IPR000529Small ribosomal subunit protein bS6Family
N [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
N [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
M [auth E]IPR000851Small ribosomal subunit protein uS5Family
M [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
M [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
M [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
M [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
J [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
J [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
J [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
J [auth B]IPR001865Small ribosomal subunit protein uS2Family
A [auth 1]IPR013177Ribosomal protein mS38, C-terminalDomain