9HEI | pdb_00009hei

Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Chlamydomonas reinhardtii


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8094937 3001534 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
S [auth Z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyMog1p/PsbP-like 8095153 3000396 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyOMPA barrel-like 8095525 3000208 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8094094 3001573 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMbtHe9heiA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MbtHECOD (v295.2)
C [auth V]PC_rep, HEAT_2, RPN2_Ce9heiV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
D [auth C]MbtHe9heiC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MbtHECOD (v295.2)
E [auth D]PAD_Ne9heiD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
G [auth F]PAD_Ne9heiF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
ICLP_proteasee9heiI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: CLP_proteaseECOD (v295.2)
JPC_rep, HEAT_2, RPN2_Ce9heiJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
P [auth Q]PsbQe9heiQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PsbQECOD (v295.2)
Q [auth T]PAD_Ne9heiT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
U [auth W]PC_rep, HEAT_2, RPN2_Ce9heiW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
HPAD_Ne9heiH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
F [auth E]PAD_Ne9heiE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
BCLP_proteasee9heiB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: CLP_proteaseECOD (v295.2)
S [auth Z]PC_rep, HEAT_2, RPN2_Ce9heiZ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
R [auth X]PC_rep, HEAT_2, RPN2_Ce9heiX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
O [auth P]PC_rep, HEAT_2, RPN2_Ce9heiP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PC_rep, HEAT_2, RPN2_CECOD (v295.2)
N [auth O]Intu_longin_1e9heiO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Intu_longin_1ECOD (v295.2)
MPAD_Ne9heiM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PAD_NECOD (v295.2)
LCLP_proteasee9heiL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: CLP_proteaseECOD (v295.2)
KMbtHe9heiK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MbtHECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth V]PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
D [auth C]PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E [auth D]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
G [auth F]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
PF01788PsbJ (PsbJ)PsbJ- Family
Q [auth T]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T proteinThe exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ...The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions [1].
Domain
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
F [auth E]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
F [auth E]PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
S [auth Z]PF01737YCF9 (Ycf9)YCF9- Family
R [auth X]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II protein D1
C [auth V]Photosystem II reaction center protein Psb30-
D [auth C]Photosystem II CP43 reaction center protein
E [auth D]Photosystem II D2 protein
G [auth F]Cytochrome b559 subunit beta
Photosystem II reaction center protein I-
Photosystem II reaction center protein J-
P [auth Q]Oxygen-evolving enhancer protein 3, chloroplastic
Q [auth T]Photosystem II reaction center protein T-
U [auth W]Photosystem II reaction center W protein, chloroplastic-
Photosystem II reaction center protein H
F [auth E]Cytochrome b559 subunit alpha
T [auth U]Photosystem II reaction center protein U-
Photosystem II CP47 reaction center protein
S [auth Z]Photosystem II reaction center protein Z-
R [auth X]4.1 kDa photosystem II subunit-
O [auth P]Oxygen-evolving enhancer protein 2, chloroplastic
N [auth O]Oxygen-evolving enhancer protein 1, chloroplastic
Photosystem II reaction center protein M-
Photosystem II reaction center protein L-
Photosystem II reaction center protein K-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005867Photosystem II protein D1Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
C [auth V]IPR010284Photosystem II reaction center protein Ycf12Family
D [auth C]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth C]IPR000932Photosystem antenna protein-likeFamily
D [auth C]IPR005869Photosystem II CP43 reaction centre proteinFamily
D [auth C]IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
E [auth D]IPR005868Photosystem II D2Family
E [auth D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth D]IPR000484Photosynthetic reaction centre, L/MFamily
E [auth D]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
E [auth D]IPR055266Photosystem II protein D1/D2Family
G [auth F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
IPR003686Photosystem II PsbIFamily
IPR002682Photosystem II PsbJFamily
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
P [auth Q]IPR008797Oxygen-evolving enhancer protein 3Family
P [auth Q]IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
P [auth Q]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
Q [auth T]IPR001743Photosystem II PsbTFamily
Q [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
U [auth W]IPR009806Photosystem II PsbW, class 2Family
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
IPR001056Photosystem II reaction centre protein HFamily
F [auth E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
T [auth U]IPR025585Photosystem II Psb27Family
T [auth U]IPR038450Photosystem II Psb27 superfamilyHomologous Superfamily
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR017486Photosystem II CP47 reaction centre proteinFamily
S [auth Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
S [auth Z]IPR002644Photosystem II PsbZ, reaction centreFamily
R [auth X]IPR009518Photosystem II PsbXFamily
O [auth P]IPR002683PsbP, C-terminalDomain
O [auth P]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
N [auth O]IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
N [auth O]IPR002628Photosystem II extrinsic protein OFamily
IPR007826Photosystem II PsbMFamily
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
IPR003372Photosystem II PsbLFamily
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
IPR003687Photosystem II PsbKFamily