9HEI | pdb_00009hei

Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Chlamydomonas reinhardtii


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094419 3000736 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8094573 3001674 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8094477 3001674 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8094383 3000736 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyCytochrome b559 subunits 8094631 3001602 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyCytochrome b559 subunits 8093904 3001602 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8094651 3001547 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8094000 3001590 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8094937 3001534 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8093946 3001585 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyPhotosystem II reaction center protein M, PsbM 8094094 3001573 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyOMPA barrel-like 8095525 3000208 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyMog1p/PsbP-like 8095153 3000396 SCOP2B (2022-06-29)
S [auth Z]SCOP2B SuperfamilyPsbZ-like 8094160 3001624 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
C [auth V]PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
D [auth C]PF00421Photosystem II protein (PSII)Photosystem II protein- Family
E [auth D]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
F [auth E]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
F [auth E]PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
G [auth F]PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
PF01788PsbJ (PsbJ)PsbJ- Family
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
PF02419PsbL protein (PsbL)PsbL protein- Family
PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
N [auth O]PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
O [auth P]PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
P [auth Q]PF05757Oxygen evolving enhancer protein 3 (PsbQ)Oxygen evolving enhancer protein 3- Family
Q [auth T]PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
R [auth X]PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
S [auth Z]PF01737YCF9 (Ycf9)YCF9- Family
U [auth W]PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem II protein D1
Photosystem II CP47 reaction center protein
C [auth V]Photosystem II reaction center protein Psb30-
D [auth C]Photosystem II CP43 reaction center protein
E [auth D]Photosystem II D2 protein
F [auth E]Cytochrome b559 subunit alpha
G [auth F]Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I-
Photosystem II reaction center protein J-
Photosystem II reaction center protein K-
Photosystem II reaction center protein L-
Photosystem II reaction center protein M-
N [auth O]Oxygen-evolving enhancer protein 1, chloroplastic
O [auth P]Oxygen-evolving enhancer protein 2, chloroplastic
P [auth Q]Oxygen-evolving enhancer protein 3, chloroplastic
Q [auth T]Photosystem II reaction center protein T-
R [auth X]4.1 kDa photosystem II subunit-
S [auth Z]Photosystem II reaction center protein Z-
T [auth U]Photosystem II reaction center protein U-
U [auth W]Photosystem II reaction center W protein, chloroplastic-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005867Photosystem II protein D1Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR017486Photosystem II CP47 reaction centre proteinFamily
C [auth V]IPR010284Photosystem II reaction center protein Ycf12Family
D [auth C]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
D [auth C]IPR000932Photosystem antenna protein-likeFamily
D [auth C]IPR005869Photosystem II CP43 reaction centre proteinFamily
D [auth C]IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
E [auth D]IPR005868Photosystem II D2Family
E [auth D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth D]IPR000484Photosynthetic reaction centre, L/MFamily
E [auth D]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
E [auth D]IPR055266Photosystem II protein D1/D2Family
F [auth E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
F [auth E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
F [auth E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
F [auth E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
G [auth F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
IPR001056Photosystem II reaction centre protein HFamily
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
IPR003686Photosystem II PsbIFamily
IPR002682Photosystem II PsbJFamily
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
IPR003687Photosystem II PsbKFamily
IPR003372Photosystem II PsbLFamily
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
IPR007826Photosystem II PsbMFamily
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
N [auth O]IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
N [auth O]IPR002628Photosystem II extrinsic protein OFamily
O [auth P]IPR002683PsbP, C-terminalDomain
O [auth P]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
P [auth Q]IPR008797Oxygen-evolving enhancer protein 3Family
P [auth Q]IPR054099Oxygen-evolving enhancer protein 3, plantsFamily
P [auth Q]IPR023222PsbQ-like domain superfamilyHomologous Superfamily
Q [auth T]IPR001743Photosystem II PsbTFamily
Q [auth T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
R [auth X]IPR009518Photosystem II PsbXFamily
S [auth Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
S [auth Z]IPR002644Photosystem II PsbZ, reaction centreFamily
T [auth U]IPR025585Photosystem II Psb27Family
T [auth U]IPR038450Photosystem II Psb27 superfamilyHomologous Superfamily
U [auth W]IPR009806Photosystem II PsbW, class 2Family