Universal Photosystem II Intermediate with Light-Dependent Water-Ferrocyanide Oxydo-reductase activity from Chlamydomonas reinhardtii
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth F] | SCOP2B Superfamily | Cytochrome b559 subunits | 8093904 | 3001602 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8094094 | 3001573 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8094000 | 3001590 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8094651 | 3001547 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | Cytochrome b559 subunits | 8094631 | 3001602 | SCOP2B (2022-06-29) |
| E [auth D] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094383 | 3000736 | SCOP2B (2022-06-29) |
| D [auth C] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094477 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8094573 | 3001674 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | PsbZ-like | 8094160 | 3001624 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | Mog1p/PsbP-like | 8095153 | 3000396 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8095525 | 3000208 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8093946 | 3001585 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8094937 | 3001534 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8094419 | 3000736 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth F] | PAD_N | e9heiF1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| M | PAD_N | e9heiM1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| I | CLP_protease | e9heiI1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: CLP_protease | ECOD (v295.2) |
| H | PAD_N | e9heiH1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| F [auth E] | PAD_N | e9heiE1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| E [auth D] | PAD_N | e9heiD1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| D [auth C] | MbtH | e9heiC1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: MbtH | ECOD (v295.2) |
| C [auth V] | PC_rep, HEAT_2, RPN2_C | e9heiV1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| U [auth W] | PC_rep, HEAT_2, RPN2_C | e9heiW1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| B | CLP_protease | e9heiB1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: CLP_protease | ECOD (v295.2) |
| S [auth Z] | PC_rep, HEAT_2, RPN2_C | e9heiZ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| R [auth X] | PC_rep, HEAT_2, RPN2_C | e9heiX1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| Q [auth T] | PAD_N | e9heiT1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PAD_N | ECOD (v295.2) |
| P [auth Q] | PsbQ | e9heiQ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PsbQ | ECOD (v295.2) |
| O [auth P] | PC_rep, HEAT_2, RPN2_C | e9heiP1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| N [auth O] | Intu_longin_1 | e9heiO1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Intu_longin_1 | ECOD (v295.2) |
| L | CLP_protease | e9heiL1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: CLP_protease | ECOD (v295.2) |
| K | MbtH | e9heiK1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: MbtH | ECOD (v295.2) |
| J | PC_rep, HEAT_2, RPN2_C | e9heiJ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: PC_rep, HEAT_2, RPN2_C | ECOD (v295.2) |
| A | MbtH | e9heiA1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: MbtH | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| G [auth F] | PF00283 | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559) | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits | - | Family |
| PF05151 | Photosystem II reaction centre M protein (PsbM) (PsbM) | Photosystem II reaction centre M protein (PsbM) | - | Family | |
| PF02532 | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI) | Photosystem II reaction centre I protein (PSII 4.8 kDa protein) | - | Family | |
| PF00737 | Photosystem II 10 kDa phosphoprotein (PsbH) | Photosystem II 10 kDa phosphoprotein | - | Family | |
| F [auth E] | PF00283 | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559) | Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits | - | Family |
| F [auth E] | PF00284 | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a) | Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit | - | Family |
| E [auth D] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
| D [auth C] | PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family |
| C [auth V] | PF05969 | Photosystem II complex subunit Ycf12 (PSII_Ycf12) | Photosystem II complex subunit Ycf12 | - | Family |
| PF00421 | Photosystem II protein (PSII) | Photosystem II protein | - | Family | |
| S [auth Z] | PF01737 | YCF9 (Ycf9) | YCF9 | - | Family |
| R [auth X] | PF06596 | Photosystem II reaction centre X protein (PsbX) (PsbX) | Photosystem II reaction centre X protein (PsbX) | - | Family |
| Q [auth T] | PF01405 | Photosystem II reaction centre T protein (PsbT) | Photosystem II reaction centre T protein | The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity ... | Domain |
| PF02533 | Photosystem II 4 kDa reaction centre component (PsbK) | Photosystem II 4 kDa reaction centre component | - | Family | |
| PF01788 | PsbJ (PsbJ) | PsbJ | - | Family | |
| PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |














