9D2F | pdb_00009d2f

3D structure and atomic model of RS3 of mouse respiratory cilia

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth b]SCOP2B SuperfamilyDpy-30/Rlla-like 8077010 3001874 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth S]PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
G [auth P],
H [auth Q]		PF10211Axonemal dynein light chain (Ax_dynein_light)Axonemal dynein light chain- Family
D [auth H]PF00782Dual specificity phosphatase, catalytic domain (DSPc)Dual specificity phosphatase, catalytic domainSer/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region [2]. Domain
BA [auth D],
CA [auth G]		PF00406Adenylate kinase (ADK)Adenylate kinaseDomain
BA [auth D],
CA [auth G]		PF05186Dpy-30 motif (Dpy-30)Dpy-30 motif- Motif
B, C
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
B, C
PF14580Leucine-rich repeat (LRR_9)Leucine-rich repeat- Repeat
B, C
PF02197Regulatory subunit of type II PKA R-subunit (RIIa)Regulatory subunit of type II PKA R-subunitDomain
V [auth E]PF02866lactate/malate dehydrogenase, alpha/beta C-terminal domain (Ldh_1_C)lactate/malate dehydrogenase, alpha/beta C-terminal domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.
Domain
V [auth E]PF00056lactate/malate dehydrogenase, NAD binding domain (Ldh_1_N)lactate/malate dehydrogenase, NAD binding domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Domain
U [auth M]PF01753MYND finger (zf-MYND)MYND fingerDomain
T [auth L]PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
S [auth K]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth J]PF16092Cilia- and flagella-associated protein 61, N-terminal domain (CFAP61_N)Cilia- and flagella-associated protein 61, N-terminal domainThis entry represents the N-terminal domain of proteins described as cilia- and flagella-associated protein. Proteins containing this domain includes FAP61 from Chlamydomonas reinhardtii. FAP61 is part of the calmodulin and spoke-associated complex ( ...This entry represents the N-terminal domain of proteins described as cilia- and flagella-associated protein. Proteins containing this domain includes FAP61 from Chlamydomonas reinhardtii. FAP61 is part of the calmodulin and spoke-associated complex (CSC) required for wild-type motility and for the stable assembly of a subset of radial spokes in motile cilia [1].
Domain
Q [auth I]PF02493MORN repeat (MORN)MORN repeat- Repeat
PF00406Adenylate kinase (ADK)Adenylate kinaseDomain
PF1446928 kDa A-kinase anchor (AKAP28)28 kDa A-kinase anchor- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth W],
M [auth X]		Cilia- and flagella-associated protein 57-
K [auth U]Dynein axonemal heavy chain 1
J [auth S]Centrin-2
G [auth P],
H [auth Q]		Axonemal dynein light intermediate polypeptide 1
F [auth O],
I [auth R]		Actin, aortic smooth muscle
E [auth N]Cilia- and flagella-associated protein 91-
D [auth H]Serine/threonine/tyrosine interacting-like 1
BA [auth D],
CA [auth G]		Adenylate kinase 7
AA [auth c]Ciliogenesis-associated TTC17-interacting protein-
Z [auth b]cAMP-dependent protein kinase type II-alpha regulatory subunit
Y [auth a]A kinase (PRKA) anchor protein 14 -
X [auth V]UPF0728 protein C10orf53 homolog- - -
B, C
Leucine-rich repeat-containing protein 23-
W [auth F]Putative malate dehydrogenase 1B -
V [auth E]Malate dehydrogenase, cytoplasmic
U [auth M]Zinc finger, MYND domain containing 12
T [auth L]Tetratricopeptide repeat protein 29-
S [auth K]Cilia- and flagella-associated protein 251-
R [auth J]Cilia- and flagella-associated protein 61-
Q [auth I]MORN repeat-containing protein 5- -
P [auth T]Dynein, axonemal, heavy chain 6
O [auth Z]Cilia- and flagella-associated protein 44
N [auth Y]Cilia- and flagella-associated protein 43-
Adenylate kinase 9 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth W],
M [auth X]		IPR052993Cilia- and flagella-associated protein 57Family
L [auth W],
M [auth X]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth W],
M [auth X]		IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
L [auth W],
M [auth X]		IPR001680WD40 repeatRepeat
L [auth W],
M [auth X]		IPR055442EML-like, second beta-propeller domainDomain
L [auth W],
M [auth X]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
K [auth U]IPR026983Dynein heavy chainFamily
K [auth U]IPR013602Dynein heavy chain, linkerDomain
K [auth U]IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
K [auth U]IPR041228Dynein heavy chain, C-terminal domainDomain
K [auth U]IPR041466Dynein heavy chain, AAA 5 extension domainDomain
K [auth U]IPR041658Dynein heavy chain AAA lid domainDomain
K [auth U]IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
K [auth U]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K [auth U]IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
K [auth U]IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
K [auth U]IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
K [auth U]IPR024743Dynein heavy chain, coiled coil stalkDomain
K [auth U]IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
K [auth U]IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
K [auth U]IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
K [auth U]IPR004273Dynein heavy chain region D6 P-loop domainDomain
K [auth U]IPR024317Dynein heavy chain, AAA module D4Domain
J [auth S]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
J [auth S]IPR050145Centrin/CML-likeFamily
J [auth S]IPR002048EF-hand domainDomain
J [auth S]IPR011992EF-hand domain pairHomologous Superfamily
J [auth S]IPR018247EF-Hand 1, calcium-binding siteBinding Site
G [auth P],
H [auth Q]		IPR019347Axonemal dynein light chainFamily
F [auth O],
I [auth R]		IPR020902Actin/actin-like conserved siteConserved Site
F [auth O],
I [auth R]		IPR043129ATPase, nucleotide binding domainHomologous Superfamily
F [auth O],
I [auth R]		IPR004001Actin, conserved siteConserved Site
F [auth O],
I [auth R]		IPR004000Actin familyFamily
E [auth N]IPR026720Cilia- and flagella-associated protein 91Family
E [auth N]IPR032840CFAP91 domainDomain
D [auth H]IPR029021Protein-tyrosine phosphatase-likeHomologous Superfamily
D [auth H]IPR001763Rhodanese-like domainDomain
D [auth H]IPR053272Serine/threonine/tyrosine-interacting-like proteinFamily
D [auth H]IPR036873Rhodanese-like domain superfamilyHomologous Superfamily
D [auth H]IPR020422Dual specificity protein phosphatase domainDomain
D [auth H]IPR000340Dual specificity phosphatase, catalytic domainDomain
BA [auth D],
CA [auth G]		IPR007858Dpy-30 motifConserved Site
BA [auth D],
CA [auth G]		IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
BA [auth D],
CA [auth G]		IPR000850Adenylate kinase/UMP-CMP kinaseFamily
BA [auth D],
CA [auth G]		IPR047499Adenylate kinase 7, dimerization/docking domainDomain
BA [auth D],
CA [auth G]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth c]IPR048777Ciliogenesis-associated TTC17-interacting protein, N-terminal domainDomain
Z [auth b]IPR000595Cyclic nucleotide-binding domainDomain
Z [auth b]IPR050503cAMP-dependent protein kinase regulatory subunit-likeFamily
Z [auth b]IPR012198cAMP-dependent protein kinase regulatory subunitFamily
Z [auth b]IPR014710RmlC-like jelly roll foldHomologous Superfamily
Z [auth b]IPR018488Cyclic nucleotide-binding, conserved siteConserved Site
Z [auth b]IPR018490Cyclic nucleotide-binding domain superfamilyHomologous Superfamily
Z [auth b]IPR003117cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domainDomain
Y [auth a]IPR053084A-kinase anchor proteinFamily
Y [auth a]IPR025663A-kinase anchor protein 28kDaFamily
X [auth V]IPR027885Uncharacterised protein family UPF0728Family
B, C
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
B, C
IPR001611Leucine-rich repeatRepeat
B, C
IPR050836SDS22/Internalin LRR-containingFamily
B, C
IPR003591Leucine-rich repeat, typical subtypeRepeat
W [auth F]IPR010945Malate dehydrogenase, type 2Family
W [auth F]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
W [auth F]IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
V [auth E]IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
V [auth E]IPR001252Malate dehydrogenase, active siteActive Site
V [auth E]IPR001557L-lactate/malate dehydrogenaseFamily
V [auth E]IPR011274Malate dehydrogenase, NAD-dependent, cytosolicFamily
V [auth E]IPR001236Lactate/malate dehydrogenase, N-terminalDomain
V [auth E]IPR010945Malate dehydrogenase, type 2Family
V [auth E]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
V [auth E]IPR022383Lactate/malate dehydrogenase, C-terminalDomain
U [auth M]IPR002893Zinc finger, MYND-typeDomain
U [auth M]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
U [auth M]IPR053248Zinc finger MYND domain-containing proteinFamily
T [auth L]IPR051476Bacterial Response Regulator Aspartate PhosphataseFamily
T [auth L]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
T [auth L]IPR019734Tetratricopeptide repeatRepeat
S [auth K]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
S [auth K]IPR001680WD40 repeatRepeat
S [auth K]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
S [auth K]IPR050630WD repeat Echinoderm Microtubule-associated Protein-likeFamily
S [auth K]IPR011992EF-hand domain pairHomologous Superfamily
S [auth K]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth J]IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily
R [auth J]IPR038884Cilia- and flagella-associated protein 61Family
R [auth J]IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
R [auth J]IPR056299CFAP61, dimerisation domainDomain
R [auth J]IPR032151Cilia- and flagella-associated protein 61, N-terminal domainDomain
Q [auth I]IPR042814MORN repeat-containing protein 5Family
Q [auth I]IPR003409MORN repeatRepeat
P [auth T]IPR026983Dynein heavy chainFamily
P [auth T]IPR013602Dynein heavy chain, linkerDomain
P [auth T]IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
P [auth T]IPR041228Dynein heavy chain, C-terminal domainDomain
P [auth T]IPR003593AAA+ ATPase domainDomain
P [auth T]IPR041466Dynein heavy chain, AAA 5 extension domainDomain
P [auth T]IPR041658Dynein heavy chain AAA lid domainDomain
P [auth T]IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
P [auth T]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth T]IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
P [auth T]IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
P [auth T]IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
P [auth T]IPR024743Dynein heavy chain, coiled coil stalkDomain
P [auth T]IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
P [auth T]IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
P [auth T]IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
P [auth T]IPR004273Dynein heavy chain region D6 P-loop domainDomain
P [auth T]IPR024317Dynein heavy chain, AAA module D4Domain
O [auth Z]IPR019775WD40 repeat, conserved siteConserved Site
O [auth Z]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth Z]IPR055439EML-like, first beta-propeller domainDomain
O [auth Z]IPR001680WD40 repeatRepeat
O [auth Z]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth Y]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
N [auth Y]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
N [auth Y]IPR001680WD40 repeatRepeat
N [auth Y]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR000850Adenylate kinase/UMP-CMP kinaseFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily