9D2F | pdb_00009d2f

3D structure and atomic model of RS3 of mouse respiratory cilia

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth b]SCOP2B SuperfamilyDpy-30/Rlla-like 8077010 3001874 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth S]PF13499EF-hand domain pair (EF-hand_7)EF-hand domain pairDomain
G [auth P],
H [auth Q]		PF10211Axonemal dynein light chain (Ax_dynein_light)Axonemal dynein light chain- Family
D [auth H]PF00782Dual specificity phosphatase, catalytic domain (DSPc)Dual specificity phosphatase, catalytic domainSer/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region [2]. Domain
BA [auth D],
CA [auth G]		PF00406Adenylate kinase (ADK)Adenylate kinaseDomain
BA [auth D],
CA [auth G]		PF05186Dpy-30 motif (Dpy-30)Dpy-30 motif- Motif
B, C
PF13516Leucine Rich repeat (LRR_6)Leucine Rich repeat- Repeat
B, C
PF14580Leucine-rich repeat (LRR_9)Leucine-rich repeat- Repeat
B, C
PF02197Regulatory subunit of type II PKA R-subunit (RIIa)Regulatory subunit of type II PKA R-subunitDomain
V [auth E]PF02866lactate/malate dehydrogenase, alpha/beta C-terminal domain (Ldh_1_C)lactate/malate dehydrogenase, alpha/beta C-terminal domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.
Domain
V [auth E]PF00056lactate/malate dehydrogenase, NAD binding domain (Ldh_1_N)lactate/malate dehydrogenase, NAD binding domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Domain
U [auth M]PF01753MYND finger (zf-MYND)MYND fingerDomain
T [auth L]PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
S [auth K]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
R [auth J]PF23150CFAP61 dimerisation domain (CFAP61_dimer)CFAP61 dimerisation domainThis entry represents a domain found at the C-terminal of the FAD reductase domain of cilia and flagella associated protein 61 (CFAP61), according to structure prediction, which may be involved in dimerisation. CFAP61 is located at the midpiece of th ...This entry represents a domain found at the C-terminal of the FAD reductase domain of cilia and flagella associated protein 61 (CFAP61), according to structure prediction, which may be involved in dimerisation. CFAP61 is located at the midpiece of the sperm, where it apparently functions in flagellum formation [1].
Domain
R [auth J]PF16092Cilia- and flagella-associated protein 61, N-terminal domain (CFAP61_N)Cilia- and flagella-associated protein 61, N-terminal domainThis entry represents the N-terminal domain of proteins described as cilia- and flagella-associated protein. Proteins containing this domain includes FAP61 from Chlamydomonas reinhardtii. FAP61 is part of the calmodulin and spoke-associated complex ( ...This entry represents the N-terminal domain of proteins described as cilia- and flagella-associated protein. Proteins containing this domain includes FAP61 from Chlamydomonas reinhardtii. FAP61 is part of the calmodulin and spoke-associated complex (CSC) required for wild-type motility and for the stable assembly of a subset of radial spokes in motile cilia [1].
Domain
Q [auth I]PF02493MORN repeat (MORN)MORN repeat- Repeat
PF00406Adenylate kinase (ADK)Adenylate kinaseDomain
PF1446928 kDa A-kinase anchor (AKAP28)28 kDa A-kinase anchor- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth W],
M [auth X]		Cilia- and flagella-associated protein 57-
K [auth U]Dynein axonemal heavy chain 1
J [auth S]Centrin-2
G [auth P],
H [auth Q]		Axonemal dynein light intermediate polypeptide 1
F [auth O],
I [auth R]		Actin, aortic smooth muscle
E [auth N]Cilia- and flagella-associated protein 91-
D [auth H]Serine/threonine/tyrosine interacting-like 1
BA [auth D],
CA [auth G]		Adenylate kinase 7
AA [auth c]Ciliogenesis-associated TTC17-interacting protein-
Z [auth b]cAMP-dependent protein kinase type II-alpha regulatory subunit
Y [auth a]A kinase (PRKA) anchor protein 14 -
X [auth V]UPF0728 protein C10orf53 homolog- - -
B, C
Leucine-rich repeat-containing protein 23-
W [auth F]Putative malate dehydrogenase 1B -
V [auth E]Malate dehydrogenase, cytoplasmic
U [auth M]Zinc finger, MYND domain containing 12
T [auth L]Tetratricopeptide repeat protein 29-
S [auth K]Cilia- and flagella-associated protein 251-
R [auth J]Cilia- and flagella-associated protein 61-
Q [auth I]MORN repeat-containing protein 5- -
P [auth T]Dynein, axonemal, heavy chain 6
O [auth Z]Cilia- and flagella-associated protein 44
N [auth Y]Cilia- and flagella-associated protein 43-
Adenylate kinase 9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth W],
M [auth X]		IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
L [auth W],
M [auth X]		IPR001680WD40 repeatRepeat
L [auth W],
M [auth X]		IPR052993Cilia- and flagella-associated protein 57Family
L [auth W],
M [auth X]		IPR055442EML-like, second beta-propeller domainDomain
L [auth W],
M [auth X]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth W],
M [auth X]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
K [auth U]IPR026983Dynein heavy chainFamily
K [auth U]IPR013602Dynein heavy chain, linkerDomain
K [auth U]IPR042219Dynein heavy chain, AAA lid domain superfamilyHomologous Superfamily
K [auth U]IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
K [auth U]IPR041228Dynein heavy chain, C-terminal domainDomain
K [auth U]IPR041658Dynein heavy chain, AAA lid domainDomain
K [auth U]IPR041466Dynein heavy chain, AAA 5 extension domainDomain
K [auth U]IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
K [auth U]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K [auth U]IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
K [auth U]IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
K [auth U]IPR024743Dynein heavy chain, coiled coil stalkDomain
K [auth U]IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
K [auth U]IPR004273Dynein heavy chain, D6 P-loop domainDomain
K [auth U]IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
K [auth U]IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
K [auth U]IPR024317Dynein heavy chain, AAA module D4Domain
J [auth S]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
J [auth S]IPR050145Centrin/CML-likeFamily
J [auth S]IPR002048EF-hand domainDomain
J [auth S]IPR011992EF-hand domain pairHomologous Superfamily
J [auth S]IPR018247EF-Hand 1, calcium-binding siteBinding Site
G [auth P],
H [auth Q]		IPR019347Axonemal dynein light chainFamily
F [auth O],
I [auth R]		IPR020902Actin/actin-like conserved siteConserved Site
F [auth O],
I [auth R]		IPR043129ATPase, nucleotide binding domainHomologous Superfamily
F [auth O],
I [auth R]		IPR004001Actin, conserved siteConserved Site
F [auth O],
I [auth R]		IPR004000Actin familyFamily
E [auth N]IPR026720Cilia- and flagella-associated protein 91Family
E [auth N]IPR032840CFAP91 domainDomain
D [auth H]IPR029021Protein-tyrosine phosphatase-likeHomologous Superfamily
D [auth H]IPR001763Rhodanese-like domainDomain
D [auth H]IPR053272Serine/threonine/tyrosine-interacting-like proteinFamily
D [auth H]IPR036873Rhodanese-like domain superfamilyHomologous Superfamily
D [auth H]IPR020422Dual specificity protein phosphatase domainDomain
D [auth H]IPR000340Dual specificity phosphatase, catalytic domainDomain
BA [auth D],
CA [auth G]		IPR007858Dpy-30 motifConserved Site
BA [auth D],
CA [auth G]		IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
BA [auth D],
CA [auth G]		IPR000850Adenylate kinase/UMP-CMP kinaseFamily
BA [auth D],
CA [auth G]		IPR047499Adenylate kinase 7, dimerization/docking domainDomain
BA [auth D],
CA [auth G]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AA [auth c]IPR048777Ciliogenesis-associated TTC17-interacting protein, N-terminal domainDomain
Z [auth b]IPR014710RmlC-like jelly roll foldHomologous Superfamily
Z [auth b]IPR018488Cyclic nucleotide-binding, conserved siteConserved Site
Z [auth b]IPR003117cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domainDomain
Z [auth b]IPR000595Cyclic nucleotide-binding domainDomain
Z [auth b]IPR050503cAMP-dependent protein kinase regulatory subunit-likeFamily
Z [auth b]IPR012198cAMP-dependent protein kinase regulatory subunitFamily
Z [auth b]IPR018490Cyclic nucleotide-binding domain superfamilyHomologous Superfamily
Y [auth a]IPR053084A-kinase anchor proteinFamily
Y [auth a]IPR025663A-kinase anchor protein 28kDaFamily
X [auth V]IPR027885Uncharacterised protein family UPF0728Family
B, C
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
B, C
IPR001611Leucine-rich repeatRepeat
B, C
IPR050836SDS22/Internalin LRR-containingFamily
B, C
IPR003591Leucine-rich repeat, typical subtypeRepeat
W [auth F]IPR010945Malate dehydrogenase, type 2Family
W [auth F]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
W [auth F]IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
V [auth E]IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
V [auth E]IPR001252Malate dehydrogenase, active siteActive Site
V [auth E]IPR011274Malate dehydrogenase, NAD-dependent, cytosolicFamily
V [auth E]IPR022383Lactate/malate dehydrogenase, C-terminalDomain
V [auth E]IPR001557L-lactate/malate dehydrogenaseFamily
V [auth E]IPR001236Lactate/malate dehydrogenase, N-terminalDomain
V [auth E]IPR010945Malate dehydrogenase, type 2Family
V [auth E]IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
U [auth M]IPR002893Zinc finger, MYND-typeDomain
U [auth M]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
U [auth M]IPR053248Zinc finger MYND domain-containing proteinFamily
T [auth L]IPR051476Bacterial Response Regulator Aspartate PhosphataseFamily
T [auth L]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
T [auth L]IPR019734Tetratricopeptide repeatRepeat
S [auth K]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
S [auth K]IPR001680WD40 repeatRepeat
S [auth K]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
S [auth K]IPR050630WD repeat Echinoderm Microtubule-associated Protein-likeFamily
S [auth K]IPR011992EF-hand domain pairHomologous Superfamily
S [auth K]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
R [auth J]IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily
R [auth J]IPR038884Cilia- and flagella-associated protein 61Family
R [auth J]IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
R [auth J]IPR056299CFAP61, dimerisation domainDomain
R [auth J]IPR032151Cilia- and flagella-associated protein 61, N-terminal domainDomain
Q [auth I]IPR042814MORN repeat-containing protein 5Family
Q [auth I]IPR003409MORN repeatRepeat
P [auth T]IPR026983Dynein heavy chainFamily
P [auth T]IPR013602Dynein heavy chain, linkerDomain
P [auth T]IPR042219Dynein heavy chain, AAA lid domain superfamilyHomologous Superfamily
P [auth T]IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
P [auth T]IPR041228Dynein heavy chain, C-terminal domainDomain
P [auth T]IPR003593AAA+ ATPase domainDomain
P [auth T]IPR041658Dynein heavy chain, AAA lid domainDomain
P [auth T]IPR041466Dynein heavy chain, AAA 5 extension domainDomain
P [auth T]IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
P [auth T]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
P [auth T]IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
P [auth T]IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
P [auth T]IPR024743Dynein heavy chain, coiled coil stalkDomain
P [auth T]IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
P [auth T]IPR004273Dynein heavy chain, D6 P-loop domainDomain
P [auth T]IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
P [auth T]IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
P [auth T]IPR024317Dynein heavy chain, AAA module D4Domain
O [auth Z]IPR019775WD40 repeat, conserved siteConserved Site
O [auth Z]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth Z]IPR055439EML-like, first beta-propeller domainDomain
O [auth Z]IPR001680WD40 repeatRepeat
O [auth Z]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
N [auth Y]IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
N [auth Y]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
N [auth Y]IPR001680WD40 repeatRepeat
N [auth Y]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR000850Adenylate kinase/UMP-CMP kinaseFamily
IPR003593AAA+ ATPase domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily