9COP | pdb_00009cop

Yeast RAVE bound to V-ATPase V1 complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth P]SCOP2B SuperfamilyARM repeat-like 8033221 3000116 SCOP2B (2022-06-29)
N [auth z]SCOP2B SuperfamilySkp1 dimerisation domain-like 8043773 3000564 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth P]PF11698V-ATPase subunit H (V-ATPase_H_C)V-ATPase subunit H- Repeat
K [auth P]PF03224V-ATPase subunit H (V-ATPase_H_N)V-ATPase subunit H- Repeat
J [auth N]PF01990ATP synthase (F/14-kDa) subunit (ATP-synt_F)ATP synthase (F/14-kDa) subunit- Family
I [auth M]PF01813ATP synthase subunit D (ATP-synt_D)ATP synthase subunit D- Family
E [auth I],
G [auth K]		PF01991ATP synthase (E/31 kDa) subunit (vATP-synt_E)ATP synthase (E/31 kDa) subunit- Family
B,
D [auth F]		PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
B,
D [auth F]		PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
B,
D [auth F]		PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain
A,
C [auth E]		PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Domain
A,
C [auth E]		PF22919C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)C-terminal domain of V and A type ATP synthaseThis entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. Domain
A,
C [auth E]		PF16886ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn)ATPsynthase alpha/beta subunit barrel-sandwich domainThis barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ...This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel-sandwich domain the C-terminal strand is circularly permuted and occupies the spatial position of the N-terminal strand in other hybrid domains.
Domain
A,
C [auth E]		PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth y]Regulator of V-ATPase in vacuolar membrane protein 2-
L [auth x]Regulator of V-ATPase in vacuolar membrane protein 1-
K [auth P]V-type proton ATPase subunit H
J [auth N]V-type proton ATPase subunit F
I [auth M]V-type proton ATPase subunit D
F [auth J],
H [auth L]		V-type proton ATPase subunit G
E [auth I],
G [auth K]		V-type proton ATPase subunit E
B,
D [auth F]		V-type proton ATPase subunit B
N [auth z]Suppressor of kinetochore protein 1
A,
C [auth E]		V-type proton ATPase catalytic subunit A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth y]IPR028241RAVE subunit 2/RogdiFamily
L [auth x]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth x]IPR001680WD40 repeatRepeat
L [auth x]IPR052208DmX-like/RAVE complex componentFamily
L [auth x]IPR022033RAVE complex protein Rav1 C-terminalDomain
L [auth x]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
K [auth P]IPR004908ATPase, V1 complex, subunit HFamily
K [auth P]IPR016024Armadillo-type foldHomologous Superfamily
K [auth P]IPR011989Armadillo-like helicalHomologous Superfamily
K [auth P]IPR038497ATPase, V1 complex, subunit H, C-terminal domain superfamilyHomologous Superfamily
K [auth P]IPR011987ATPase, V1 complex, subunit H, C-terminalDomain
J [auth N]IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
J [auth N]IPR005772ATPase, V1 complex, subunit F, eukaryoticFamily
J [auth N]IPR008218ATPase, V1 complex, subunit FFamily
I [auth M]IPR002699ATPase, V1 complex, subunit DFamily
F [auth J],
H [auth L]		IPR005124Vacuolar (H+)-ATPase G subunitFamily
E [auth I],
G [auth K]		IPR038495V-type ATPase subunit E, C-terminal domain superfamilyHomologous Superfamily
E [auth I],
G [auth K]		IPR002842V-type ATPase subunit EFamily
B,
D [auth F]		IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
B,
D [auth F]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B,
D [auth F]		IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
B,
D [auth F]		IPR005723ATPase, V1 complex, subunit BFamily
B,
D [auth F]		IPR022879V-type ATP synthase regulatory subunit B/betaFamily
B,
D [auth F]		IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
B,
D [auth F]		IPR055190ATP synthase A/B type, C-terminal domainDomain
N [auth z]IPR016073SKP1 component, POZ domainDomain
N [auth z]IPR001232S-phase kinase-associated protein 1-likeFamily
N [auth z]IPR036296SKP1-like, dimerisation domain superfamilyHomologous Superfamily
N [auth z]IPR016072SKP1 component, dimerisationDomain
N [auth z]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
N [auth z]IPR016897S-phase kinase-associated protein 1Family
A,
C [auth E]		IPR036844Hint domain superfamilyHomologous Superfamily
A,
C [auth E]		IPR022878V-type ATP synthase catalytic alpha chainFamily
A,
C [auth E]		IPR006142InteinDomain
A,
C [auth E]		IPR007868Hom-end-associated HintDomain
A,
C [auth E]		IPR004042Intein DOD homing endonuclease, central regionDomain
A,
C [auth E]		IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A,
C [auth E]		IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A,
C [auth E]		IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A,
C [auth E]		IPR006141Intein N-terminal splicing regionPTM
A,
C [auth E]		IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A,
C [auth E]		IPR003586Hint domain C-terminalDomain
A,
C [auth E]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A,
C [auth E]		IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A,
C [auth E]		IPR030934Intein C-terminal splicing regionConserved Site
A,
C [auth E]		IPR027434Homing endonucleaseHomologous Superfamily
A,
C [auth E]		IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A,
C [auth E]		IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A,
C [auth E]		IPR055190ATP synthase A/B type, C-terminal domainDomain
A,
C [auth E]		IPR003587Hint domain N-terminalDomain
A,
C [auth E]		IPR007869Homing endonuclease PI-SceDomain