Cryo-EM structure of PqqU with ligand PQQ
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Plug | e9c4oA01 | A: a/b three-layered sandwiches | X: ATP-grasp_6 | H: ATP-grasp_6 | T: ATP-grasp_6 | F: Plug | ECOD (v294.1) |
| A | PRODH | e9c4oA02 | A: a/b three-layered sandwiches | X: ATP-grasp_6 | H: ATP-grasp_6 | T: ATP-grasp_6 | F: PRODH | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00593 | TonB dependent receptor-like, beta-barrel (TonB_dep_Rec_b-barrel) | TonB dependent receptor-like, beta-barrel | This entry represents the beta-barrel domain of TonB-dependent receptors, such as BtuB, CirA, FatA, FcuT, FecA, FepA, among others [1]. | Domain | |
| PF07715 | TonB-dependent Receptor Plug Domain (Plug) | TonB-dependent Receptor Plug Domain | The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors ([1]). It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR039426 | TonB-dependent receptor-like | Family | |
| IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily | |
| IPR010105 | TonB-dependent siderophore receptor | Family | |
| IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily | |
| IPR012910 | TonB-dependent receptor, plug domain | Domain | |
| IPR048212 | Pyrroloquinoline quinone transporter | Family | |
| IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |














