9A0K | pdb_00009a0k

A structural model of the endogenoushuman SWI/SNF (BAF) complex bound to the nucleosome informs disease mechanisms


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SMARCE1
SMARCD1
SMARCC2
SMARCC1
SMARCB1
SMARCA4
DPF2
ARID1A
ACTL6A
601 dna rev---
601 dna fwd---
Y, y
H4
X, x
H3
W, w
H2B
V, v
H2A
ACTB

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009071High mobility group box domainDomain
IPR036910High mobility group box domain superfamilyHomologous Superfamily
IPR003121SWIB/MDM2 domainDomain
IPR038041SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 1, SWIB domainDomain
IPR036885SWIB/MDM2 domain superfamilyHomologous Superfamily
IPR019835SWIB domainDomain
IPR049898MarR-like, BRCT and chromo domains moduleDomain
IPR032451SMARCC, C-terminalDomain
IPR036420BRCT domain superfamilyHomologous Superfamily
IPR009057Homedomain-like superfamilyHomologous Superfamily
IPR000953Chromo/chromo shadow domainDomain
IPR032450SMARCC, N-terminalDomain
IPR032448SMARCC, SWIRM-associated domainDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR017884SANT domainDomain
IPR001005SANT/Myb domainDomain
IPR007526SWIRM domainDomain
IPR032451SMARCC, C-terminalDomain
IPR009057Homedomain-like superfamilyHomologous Superfamily
IPR032450SMARCC, N-terminalDomain
IPR032448SMARCC, SWIRM-associated domainDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR017884SANT domainDomain
IPR007526SWIRM domainDomain
IPR049898MarR-like, BRCT and chromo domains moduleDomain
IPR036420BRCT domain superfamilyHomologous Superfamily
IPR000953Chromo/chromo shadow domainDomain
IPR001005SANT/Myb domainDomain
IPR048664SWI/SNF Subunit INI1, DNA binding domainDomain
IPR017393Chromatin-remodeling complex component Sfh1/SNF5Family
IPR006939SNF5/SMARCB1/INI1Family
IPR030100SWI/SNF complex subunit BRG1, ATP-bindingDomain
IPR018359Bromodomain, conserved siteConserved Site
IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
IPR014978Glutamine-Leucine-Glutamine, QLQDomain
IPR006576BRK domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR037259BRK domain superfamilyHomologous Superfamily
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR029295Snf2, ATP coupling domainDomain
IPR000330SNF2, N-terminalDomain
IPR001487BromodomainDomain
IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
IPR014012Helicase/SANT-associated domainDomain
IPR001965Zinc finger, PHD-typeDomain
IPR013087Zinc finger C2H2-typeDomain
IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
IPR025750DPF1-3, N-terminal domainDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR030094AT-rich interactive domain-containing protein 1A, ARID/BRIGHT DNA binding domainDomain
IPR016024Armadillo-type foldHomologous Superfamily
IPR001606ARID DNA-binding domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR021906SWI/SNF-like complex subunit BAF250/OsaFamily
IPR033388SWI/SNF-like complex subunit BAF250, C-terminalDomain
IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily
Y, y
IPR009072Histone-foldHomologous Superfamily
Y, y
IPR035425CENP-T/Histone H4, histone foldDomain
Y, y
IPR001951Histone H4Family
Y, y
IPR019809Histone H4, conserved siteConserved Site
Y, y
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
X, x
IPR009072Histone-foldHomologous Superfamily
X, x
IPR007125Core Histone H2A/H2B/H3 domainDomain
X, x
IPR000164Histone H3/CENP-AFamily
W, w
IPR009072Histone-foldHomologous Superfamily
W, w
IPR000558Histone H2BFamily
W, w
IPR007125Core Histone H2A/H2B/H3 domainDomain
W, w
IPR055333Histone H2B, conserved siteConserved Site
V, v
IPR009072Histone-foldHomologous Superfamily
V, v
IPR002119Histone H2AFamily
V, v
IPR007125Core Histone H2A/H2B/H3 domainDomain
V, v
IPR032454Histone H2A, C-terminal domainDomain
V, v
IPR032458Histone H2A conserved siteConserved Site
IPR020902Actin/actin-like conserved siteConserved Site
IPR004001Actin, conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004000Actin familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ969G3
PharosQ96GM5
PharosQ8TAQ2
PharosQ92922
PharosQ12824
PharosP51532
PharosQ92785
PharosO14497
PharosO96019
Y, y
PharosP62805
X, x
PharosP68431
W, w
PharosP62807
V, v
PharosP0C0S8
PharosP60709