9ZKV | pdb_00009zkv

The LBD-TMD structure of native mouse AMPAR with 2 TARPs

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth H]SCOP2B SuperfamilyClaudin-like 8103178 3002606 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyClaudin-like 8103178 3002606 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth H]ClpB_D2-smalle9zkvH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: ClpB_D2-smallECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth G],
F [auth H]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth G],
F [auth H]		Voltage-dependent calcium channel gamma-8 subunit
B, D
Glutamate receptor 2 -
A, C
Glutamate receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth G],
F [auth H]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
E [auth G],
F [auth H]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
E [auth G],
F [auth H]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
E [auth G],
F [auth H]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily
B, D
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
B, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
B, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
B, D
IPR001828Receptor, ligand binding regionDomain
B, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR015683Ionotropic glutamate receptorFamily