9ZCW | pdb_00009zcw

Cryo-EM structure of the engineered vector AAV2.ATX002

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], BB [auth t], C [auth 3], CA [auth U], CB [auth u], D [auth 4], DA [auth V], DB [auth v], E [auth 5], EA [auth W], EB [auth w], F [auth 6], FA [auth X], FB [auth x], G [auth 7], GA [auth Y], GB [auth y], H [auth 8], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	Engineered AAV2 capsid protein VP3	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], BB [auth t], C [auth 3], CA [auth U], CB [auth u], D [auth 4], DA [auth V], DB [auth v], E [auth 5], EA [auth W], EB [auth w], F [auth 6], FA [auth X], FB [auth x], G [auth 7], GA [auth Y], GB [auth y], H [auth 8], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	IPR013607	Phospholipase A2-like domain	Domain
A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], BB [auth t], C [auth 3], CA [auth U], CB [auth u], D [auth 4], DA [auth V], DB [auth v], E [auth 5], EA [auth W], EB [auth w], F [auth 6], FA [auth X], FB [auth x], G [auth 7], GA [auth Y], GB [auth y], H [auth 8], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], BB [auth t], C [auth 3], CA [auth U], CB [auth u], D [auth 4], DA [auth V], DB [auth v], E [auth 5], EA [auth W], EB [auth w], F [auth 6], FA [auth X], FB [auth x], G [auth 7], GA [auth Y], GB [auth y], H [auth 8], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], A [auth 1], AA [auth S], AB [auth s], B [auth 2], BA [auth T], BB [auth t], C [auth 3], CA [auth U], CB [auth u], D [auth 4], DA [auth V], DB [auth v], E [auth 5], EA [auth W], EB [auth w], F [auth 6], FA [auth X], FB [auth x], G [auth 7], GA [auth Y], GB [auth y], H [auth 8], HA [auth Z], HB [auth z], I [auth A], IA [auth a], J [auth B], JA [auth b], K [auth C], KA [auth c], L [auth D], LA [auth d], M [auth E], MA [auth e], N [auth F], NA [auth f], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], QA [auth i], R [auth J], RA [auth j], S [auth K], SA [auth k], T [auth L], TA [auth l], U [auth M], UA [auth m], V [auth N], VA [auth n], W [auth O], WA [auth o], X [auth P], XA [auth p], Y [auth Q], YA [auth q], Z [auth R], ZA [auth r]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.