9Z4W | pdb_00009z4w

Cryo-EM structure of rabbit major vault protein complex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	PF01505	Major Vault Protein repeat domain (Vault)	Major Vault Protein repeat domain	The vault is a ubiquitous and highly conserved ribonucleoprotein particle of approximately 13 mDa of unknown function [1]. This family corresponds to a repeated domain found in the amino terminal half of the major vault protein.	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	PF17794	Major Vault Protein repeat domain (Vault_2)	Major Vault Protein repeat domain	This short domain is found repeated numerous times in the Major Vault Protein. This entry is related to Pfam:PF01505.	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	PF17795	Major Vault Protein Repeat domain (Vault_3)	Major Vault Protein Repeat domain	This domain is found in the Major Vault Protein.	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	PF17796	Major Vault Protein repeat domain (Vault_4)	Major Vault Protein repeat domain		Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	PF11978	Shoulder domain (MVP_shoulder)	Shoulder domain	This domain is found in the Major Vault Protein and has been called the shoulder domain [1]. This family includes two bacterial proteins Swiss:A6FXE2 and Swiss:A1ZGE7. This suggests that some bacteria may possess vault particles.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	Major vault protein	protein binding binding kinase binding enzyme binding protein kinase binding identical protein binding protein phosphatase binding phosphatase binding	cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of biological process regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication protein activation cascade biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasm cytosol perinuclear region of cytoplasm protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR040989	Major vault protein repeat domain 3	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR039059	Major vault protein	Family
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR041136	Major vault protein repeat domain 4	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR002499	Major vault protein, N-terminal	Repeat
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR041139	Major vault protein repeat domain	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR043023	Major vault protein repeat domain superfamily	Homologous Superfamily
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR043179	Major vault protein repeat domain 2 superfamily	Homologous Superfamily
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR021870	Major vault protein, shoulder domain	Domain
A, AA [auth a], AB [auth 0], B, BA [auth b], A, AA [auth a], AB [auth 0], B, BA [auth b], BB [auth 1], C, CA [auth c], CB [auth 2], D, DA [auth d], DB [auth 3], E, EA [auth e], EB [auth 4], F, FA [auth f], FB [auth 5], G, GA [auth g], GB [auth 6], H, HA [auth h], HB [auth 7], I, IA [auth i], IB [auth 8], J, JA [auth j], JB [auth 9], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR041134	Major vault protein repeat domain 2	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.