Annotations: 9Z06

Structure of human lymphoid-specific helicase HELLS in its auto-inhibitory state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	ClpB_D2-small	e9z06F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
E	ClpB_D2-small	e9z06E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
D	ClpB_D2-small	e9z06D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
C	TrkA_N	e9z06C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: TrkA_N	ECOD (v295.2)
B	ClpB_D2-small	e9z06B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)
A	ClpB_D2-small	e9z06A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: ClpB_D2-small	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00176	SNF2-related domain (SNF2-rel_dom)	SNF2-related domain	This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ...	This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1)[1,2,3]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Lymphoid-specific helicase	nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity chromatin binding binding ATP-dependent activity, acting on DNA ATP-dependent chromatin remodeler activity catalytic activity, acting on DNA adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides	regulation of cellular process negative regulation of biological process negative regulation of gene expression via chromosomal CpG island methylation cellular component organization chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression negative regulation of metabolic process biological regulation regulation of cellular process negative regulation of biological process negative regulation of gene expression via chromosomal CpG island methylation cellular component organization chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process epigenetic regulation of gene expression negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cell division cellular component biogenesis cellular component assembly heterochromatin formation heterochromatin organization pericentric heterochromatin formation constitutive heterochromatin formation RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process multicellular organismal process cell population proliferation mononuclear cell proliferation immune system process lymphocyte proliferation cell activation lymphocyte activation leukocyte proliferation leukocyte activation DNA methylation-dependent constitutive heterochromatin formation cellular response to stimulus double-strand break repair response to stimulus DNA recombination DNA metabolic process cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair developmental process multicellular organism development anatomical structure development animal organ development kidney development animal gross anatomical part developmental process renal system development system development	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region pericentric heterochromatin chromatin heterochromatin site of double-strand break site of DNA damage intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle chromosome, centromeric region intracellular membraneless organelle chromosome chromosomal region pericentric heterochromatin chromatin heterochromatin site of double-strand break site of DNA damage membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR044753	HELLS, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR049730	SNF2/RAD5-like, C-terminal helicase domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR038718	SNF2-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000330	SNF2, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001650	Helicase, C-terminal domain-like	Domain
A, B, C, D, E A, B, C, D, E, F	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	: Q9NRZ9	immunodeficiency-centromeric instability-facial anomalies syndrome 4 polycystic ovary syndrome Liver Cirrhosis, Experimental immunodeficiency-centromeric instability-facial anomalies syndrome malignant mesothelioma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma psoriasis atypical teratoid rhabdoid tumor ulcerative colitis ductal breast carcinoma in situ gastric carcinoma malignant ependymoma malignant pancreatic neoplasm immunodeficiency-centromeric instability-facial anomalies syndrome 4 polycystic ovary syndrome Liver Cirrhosis, Experimental immunodeficiency-centromeric instability-facial anomalies syndrome malignant mesothelioma nasopharyngeal carcinoma ovarian cancer pilocytic astrocytoma psoriasis atypical teratoid rhabdoid tumor ulcerative colitis ductal breast carcinoma in situ gastric carcinoma malignant ependymoma malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma adrenal cortex carcinoma breast cancer endometriosis glioblastoma invasive ductal breast carcinoma lung adenocarcinoma malignant glioma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor atopic eczema Sjogren syndrome gastric cancer large cell medulloblastoma lung cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.