9YX1 | pdb_00009yx1

Structure of the long chain acyl-CoA carboxylase complex from Mycobacterium smegmatis

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O [auth E], T [auth P]	PF13822	Acyl-CoA carboxylase epsilon subunit (ACC_epsilon)	Acyl-CoA carboxylase epsilon subunit	-	Family
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	PF00364	Biotin-requiring enzyme (Biotin_lipoyl)	Biotin-requiring enzyme	This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2)	Carbamoyl-phosphate synthase L chain, ATP binding domain	Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The c ...	Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00988. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. The ATP binding domain (this one) has an ATP-grasp fold.	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	PF02785	Biotin carboxylase C-terminal domain (Biotin_carb_C)	Biotin carboxylase C-terminal domain	Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in ...	Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference [1] are in this C-terminal domain.	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	PF00289	Biotin carboxylase, N-terminal domain (Biotin_carb_N)	Biotin carboxylase, N-terminal domain	This domain is structurally related to the PreATP-grasp domain. The family contains the N-terminus of biotin carboxylase enzymes [1,3], and propionyl-CoA carboxylase A chain [2].	Domain
B [auth G], C [auth H], E [auth M], F [auth N]	PF01039	Carboxyl transferase domain (Carboxyl_trans)	Carboxyl transferase domain	-	Family
A [auth F], G [auth O]	PF01039	Carboxyl transferase domain (Carboxyl_trans)	Carboxyl transferase domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth E], T [auth P]	Acetyl-/propionyl-coenzyme A carboxylase AccE5	CoA carboxylase activity acetyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity propionyl-CoA carboxylase activity	-	-
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	Biotin-dependent acyl-coenzyme A carboxylase alpha3 subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding biotin carboxylase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cation binding metal ion binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process	-
B [auth G], C [auth H], E [auth M], F [auth N]	Propionyl-CoA carboxylase beta chain	CoA carboxylase activity acetyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity propionyl-CoA carboxylase activity	metabolic process cellular process carbon fixation	acetyl-CoA carboxylase complex protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm
A [auth F], G [auth O]	Propionyl-CoA carboxylase beta chain	CoA carboxylase activity propionyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity	-	acetyl-CoA carboxylase complex protein-containing complex cellular anatomical structure intracellular anatomical structure catalytic complex cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
O [auth E], T [auth P]	IPR032716	Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase epsilon subunit	Family
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR011761	ATP-grasp fold	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR011764	Biotin carboxylation domain	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR013815	ATP-grasp fold, subdomain 1	Homologous Superfamily
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR050856	Biotin-dependent Carboxylase Complex	Family
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR005479	Carbamoyl phosphate synthase, ATP-binding domain	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR005482	Biotin carboxylase, C-terminal	Domain
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR011053	Single hybrid motif	Homologous Superfamily
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR001882	Biotin-binding site	Binding Site
D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], D [auth K], H [auth I], I [auth J], J [auth L], K [auth A], L [auth D], M [auth B], N [auth C], P [auth Q], Q [auth S], R, S [auth T]	IPR000089	Biotin/lipoyl attachment	Domain
B [auth G], C [auth H], E [auth M], F [auth N]	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
B [auth G], C [auth H], E [auth M], F [auth N]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
B [auth G], C [auth H], E [auth M], F [auth N]	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
B [auth G], C [auth H], E [auth M], F [auth N]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
B [auth G], C [auth H], E [auth M], F [auth N]	IPR051047	Acyl-CoA Carboxylase Beta Subunit	Family
A [auth F], G [auth O]	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
A [auth F], G [auth O]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth F], G [auth O]	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
A [auth F], G [auth O]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
A [auth F], G [auth O]	IPR051047	Acyl-CoA Carboxylase Beta Subunit	Family