| IPR009072 | Histone-fold | Homologous Superfamily |
| IPR002119 | Histone H2A | Family |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain |
| IPR032454 | Histone H2A, C-terminal domain | Domain |
| IPR032458 | Histone H2A conserved site | Conserved Site |
M [auth P], N [auth Q] | IPR037856 | Sdc1/DPY30 | Family |
M [auth P], N [auth Q] | IPR007858 | Dpy-30 motif | Conserved Site |
M [auth P], N [auth Q] | IPR049629 | DPY30/SDC1, dimerization/docking domain | Domain |
| L [auth T] | IPR053835 | Set1/Ash2 histone methyltransferase complex subunit ASH2-like, winged-helix | Domain |
| L [auth T] | IPR001870 | B30.2/SPRY domain | Domain |
| L [auth T] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
| L [auth T] | IPR043136 | B30.2/SPRY domain superfamily | Homologous Superfamily |
| L [auth T] | IPR049455 | Set1/Ash2 histone methyltransferase complex subunit ASH2-like, PHD zinc finger | Domain |
| L [auth T] | IPR037353 | Histone methyltransferase complex subunit ASH2 | Family |
| L [auth T] | IPR003877 | SPRY domain | Domain |
| IPR037890 | KMT2D, SET domain | Domain |
| IPR001965 | Zinc finger, PHD-type | Domain |
| IPR046341 | SET domain superfamily | Homologous Superfamily |
| IPR047000 | KMT2D, PHD3 domain | Domain |
| IPR001214 | SET domain | Domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR003889 | FY-rich, C-terminal | Conserved Site |
| IPR041961 | KMT2D, ePHD1 domain | Domain |
| IPR046999 | KMT2D, PHD5 domain | Domain |
| IPR019787 | Zinc finger, PHD-finger | Domain |
| IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
| IPR003888 | FY-rich, N-terminal | Conserved Site |
| IPR041964 | KMT2D, ePHD2 domain | Domain |
| IPR001841 | Zinc finger, RING-type | Domain |
| IPR003616 | Post-SET domain | Domain |
| IPR034732 | Extended PHD (ePHD) domain | Domain |
| IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |
| IPR037890 | KMT2D, SET domain | Domain |
| IPR001965 | Zinc finger, PHD-type | Domain |
| IPR046341 | SET domain superfamily | Homologous Superfamily |
| IPR047000 | KMT2D, PHD3 domain | Domain |
| IPR001214 | SET domain | Domain |
| IPR019787 | Zinc finger, PHD-finger | Domain |
| IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily |
| IPR041964 | KMT2D, ePHD2 domain | Domain |
| IPR003616 | Post-SET domain | Domain |
| IPR034732 | Extended PHD (ePHD) domain | Domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR003889 | FY-rich, C-terminal | Conserved Site |
| IPR041961 | KMT2D, ePHD1 domain | Domain |
| IPR046999 | KMT2D, PHD5 domain | Domain |
| IPR003888 | FY-rich, N-terminal | Conserved Site |
| IPR001841 | Zinc finger, RING-type | Domain |
| IPR009071 | High mobility group box domain | Domain |
| IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |
| J [auth N] | IPR037850 | Retinoblastoma-binding protein 5/Swd1 | Family |
| J [auth N] | IPR001680 | WD40 repeat | Repeat |
| J [auth N] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
| I [auth R] | IPR059122 | WDR5-like, beta-propeller domain | Domain |
| I [auth R] | IPR019775 | WD40 repeat, conserved site | Conserved Site |
| I [auth R] | IPR020472 | PAC1/LIS1-like, WD-40 repeat | Repeat |
| I [auth R] | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
| I [auth R] | IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
| I [auth R] | IPR001680 | WD40 repeat | Repeat |
| IPR009072 | Histone-fold | Homologous Superfamily |
| IPR000558 | Histone H2B | Family |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain |
| IPR055333 | Histone H2B, conserved site | Conserved Site |
| IPR009072 | Histone-fold | Homologous Superfamily |
| IPR035425 | CENP-T/Histone H4, histone fold | Domain |
| IPR001951 | Histone H4 | Family |
| IPR019809 | Histone H4, conserved site | Conserved Site |
| IPR004823 | TATA box binding protein associated factor (TAF), histone-like fold domain | Domain |
| IPR009072 | Histone-fold | Homologous Superfamily |
| IPR007125 | Core Histone H2A/H2B/H3 domain | Domain |
| IPR000164 | Histone H3/CENP-A | Family |