9YLY | pdb_00009yly

MLL4FC bound to a nucleosome with p53 RE


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8039342 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8066283 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8066283 3001387 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyDpy-30/Rlla-like 8104118 3001874 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyDpy-30/Rlla-like 8104118 3001874 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
I [auth R]PF25175WDR5 beta-propeller domain (Beta-prop_WDR5)WDR5 beta-propeller domain- Repeat
J [auth N]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF00856SET domain (SET)SET domain- Family
PF05965F/Y rich C-terminus (FYRC)F/Y rich C-terminus- Family
PF05964F/Y-rich N-terminus (FYRN)F/Y-rich N-terminus- Family
PF13832PHD-zinc-finger like domain (zf-HC5HC2H_2)PHD-zinc-finger like domainDomain
L [auth T]PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain
M [auth P],
N [auth Q]
PF05186Dpy-30 motif (Dpy-30)Dpy-30 motif- Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3.1
B, F
Histone H4
C, G
Histone H2A type 1-B/E
D, H
Histone H2B type 2-E
I [auth R]WD repeat-containing protein 5
J [auth N]Retinoblastoma-binding protein 5
[histone H3]-lysine(4) N-methyltransferase,Histone-lysine N-methyltransferase 2D
L [auth T]Set1/Ash2 histone methyltransferase complex subunit ASH2
M [auth P],
N [auth Q]
Protein dpy-30 homolog
O [auth I]DNA (165-MER)---
P [auth J]DNA (165-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Core Histone H2A/H2B/H3 domainDomain
A, E
IPR000164Histone H3/CENP-AFamily
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR002119Histone H2AFamily
C, G
IPR007125Core Histone H2A/H2B/H3 domainDomain
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR000558Histone H2BFamily
D, H
IPR007125Core Histone H2A/H2B/H3 domainDomain
D, H
IPR055333Histone H2B, conserved siteConserved Site
I [auth R]IPR059122WDR5-like, beta-propeller domainDomain
I [auth R]IPR019775WD40 repeat, conserved siteConserved Site
I [auth R]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
I [auth R]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth R]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
I [auth R]IPR001680WD40 repeatRepeat
J [auth N]IPR037850Retinoblastoma-binding protein 5/Swd1Family
J [auth N]IPR001680WD40 repeatRepeat
J [auth N]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR037890KMT2D, SET domainDomain
IPR001965Zinc finger, PHD-typeDomain
IPR046341SET domain superfamilyHomologous Superfamily
IPR047000KMT2D, PHD3 domainDomain
IPR001214SET domainDomain
IPR019787Zinc finger, PHD-fingerDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR041964KMT2D, ePHD2 domainDomain
IPR003616Post-SET domainDomain
IPR034732Extended PHD (ePHD) domainDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR003889FY-rich, C-terminalConserved Site
IPR041961KMT2D, ePHD1 domainDomain
IPR046999KMT2D, PHD5 domainDomain
IPR003888FY-rich, N-terminalConserved Site
IPR001841Zinc finger, RING-typeDomain
IPR009071High mobility group box domainDomain
IPR036910High mobility group box domain superfamilyHomologous Superfamily
L [auth T]IPR053835Set1/Ash2 histone methyltransferase complex subunit ASH2-like, winged-helixDomain
L [auth T]IPR001870B30.2/SPRY domainDomain
L [auth T]IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
L [auth T]IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
L [auth T]IPR049455Set1/Ash2 histone methyltransferase complex subunit ASH2-like, PHD zinc fingerDomain
L [auth T]IPR037353Histone methyltransferase complex subunit ASH2Family
L [auth T]IPR003877SPRY domainDomain
M [auth P],
N [auth Q]
IPR037856Sdc1/DPY30Family
M [auth P],
N [auth Q]
IPR007858Dpy-30 motifConserved Site
M [auth P],
N [auth Q]
IPR049629DPY30/SDC1, dimerization/docking domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, E
P68431
B, F
P62805
C, G
P04908
D, H
Q16778
I [auth R]P61964
J [auth N]Q15291
O14686
L [auth T]Q9UBL3
M [auth P],
N [auth Q]
Q9C005