9YG5 | pdb_00009yg5

VPS13A/Ct-XKR1

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D]	Endoplasmic reticulum membrane adapter protein XK	protein-macromolecule adaptor activity molecular adaptor activity	regulation of neuron projection development multicellular organismal process axonogenesis regulation of cellular component organization regulation of cellular process cellular developmental process regulation of developmental process regulation of cellular component size cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis regulation of axon diameter cellular component organization regulation of neuron projection development multicellular organismal process axonogenesis regulation of cellular component organization regulation of cellular process cellular developmental process regulation of developmental process regulation of cellular component size cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis regulation of axon diameter cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis regulation of axonogenesis cell differentiation anatomical structure development cellular component organization or biogenesis regulation of biological quality regulation of anatomical structure morphogenesis system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development regulation of cell projection size axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development cellular process regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size inorganic ion homeostasis homeostatic process intracellular magnesium ion homeostasis magnesium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis myotube cell development skeletal muscle fiber development skeletal muscle tissue development animal organ development tissue development muscle cell differentiation myotube differentiation striated muscle tissue development muscle structure development skeletal muscle organ development striated muscle cell development muscle cell development muscle tissue development muscle organ development striated muscle cell differentiation regulation of cell size amino acid transport localization transport establishment of localization myelination axon ensheathment ensheathment of neurons intracellular calcium ion homeostasis calcium ion homeostasis	cellular anatomical structure membrane cell periphery plasma membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cellular anatomical structure membrane cell periphery plasma membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
B	Intermembrane lipid transfer protein VPS13A	-	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication brain-derived neurotrophic factor receptor signaling pathway cellular process signal transduction enzyme-linked receptor protein signaling pathway adult locomotory behavior cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication brain-derived neurotrophic factor receptor signaling pathway cellular process signal transduction enzyme-linked receptor protein signaling pathway adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior exploration behavior defense response response to stress inflammatory response neuroinflammatory response localization transport macromolecule localization lipid localization lipid transport establishment of localization catabolic process autophagy metabolic process process utilizing autophagic mechanism cellular component organization organelle organization sperm mitochondrion organization cellular component organization or biogenesis mitochondrion organization system process nervous system process neuromuscular process neuromuscular process controlling balance sperm motility reproductive process cilium movement involved in cell motility cilium or flagellum-dependent cell motility cilium-dependent cell motility flagellated sperm motility microtubule-based movement microtubule-based process cilium movement cell motility developmental process myeloid leukocyte differentiation cellular developmental process hemopoiesis macrophage differentiation cell development mononuclear cell differentiation nervous system development multicellular organism development neurogenesis central nervous system development gliogenesis glial cell differentiation myeloid cell differentiation cell differentiation microglia differentiation anatomical structure development system development leukocyte differentiation response to environmental enrichment response to external stimulus biosynthetic process macromolecule metabolic process gene expression macromolecule biosynthetic process establishment of protein localization cellular localization protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle vacuolar transport intracellular protein localization protein targeting to vacuole intracellular protein transport biological process involved in intraspecies interaction between organisms social behavior secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region secretion by cell homeostatic process erythrocyte differentiation multicellular organismal-level homeostasis immune system process homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis protein catabolic process in the vacuole lysosomal protein catabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule catabolic process response to osmotic stress cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus cellular response to chemical stimulus cellular response to stress response to chemical response to abiotic stimulus cellular response to abiotic stimulus motor behavior negative regulation of signaling modulation of chemical synaptic transmission negative regulation of biological process negative regulation of synaptic transmission negative regulation of cell communication synaptic signaling negative regulation of cellular process regulation of biological quality regulation of synaptic plasticity trans-synaptic signaling regulation of signaling cell-cell signaling chemical synaptic transmission regulation of trans-synaptic signaling long-term synaptic depression anterograde trans-synaptic signaling regulation of cell communication maintenance of protein location protein localization to Golgi apparatus maintenance of location maintenance of location in cell maintenance of protein location in cell protein retention in Golgi apparatus cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis plasma membrane bounded cell projection organization generation of neurons anatomical structure morphogenesis neuron projection arborization neuron development multicellular organism growth developmental growth growth Golgi to endosome transport post-Golgi vesicle-mediated transport vesicle-mediated transport intercellular transport cytosolic transport Golgi vesicle transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen endomembrane system membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site intracellular vesicle membrane-enclosed lumen cytoplasmic vesicle lumen endomembrane system intracellular organelle lumen cytoplasmic vesicle neuronal dense core vesicle lumen vesicle neuronal dense core vesicle vesicle lumen dense core granule secretory granule lumen organelle lumen secretory granule dense core granule lumen secretory vesicle mitochondrial membrane membrane organelle envelope mitochondrial envelope organelle membrane cytosol cell projection sperm midpiece cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane neuron projection vacuolar membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane lysosome Golgi apparatus lipid droplet membraneless organelle intracellular membraneless organelle endosome membrane endosome cytoplasmic vesicle membrane vesicle membrane organelle outer membrane mitochondrial outer membrane outer membrane somatodendritic compartment cell body neuronal cell body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D]	IPR018629	XK-related protein	Family
A [auth D]	IPR051773	XK-related membrane adapter	Family
B	IPR056748	Intermembrane lipid transfer protein VPS13-like, C-terminal	Domain
B	IPR026854	Vacuolar protein sorting-associated protein 13, N-terminal domain	Domain
B	IPR056747	VPS13-like, middle region	Domain
B	IPR026847	Vacuolar protein sorting-associated protein 13	Family
B	IPR009543	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D]	: P51811	McLeod neuroacanthocytosis syndrome neuroacanthocytosis peripheral nervous system disease neuromuscular disease peripheral neuropathy hematologic disease McLeod syndrome chorea-acanthocytosis subependymal giant cell astrocytoma large cell medulloblastoma ulcerative colitis malignant ependymoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma endometriosis McLeod neuroacanthocytosis syndrome neuroacanthocytosis peripheral nervous system disease neuromuscular disease peripheral neuropathy hematologic disease McLeod syndrome chorea-acanthocytosis subependymal giant cell astrocytoma large cell medulloblastoma ulcerative colitis malignant ependymoma astrocytic tumor pancreatic intraductal papillary-mucinous carcinoma endometriosis pilocytic astrocytoma glioblastoma psychiatric disorder intellectual disability transitional cell carcinoma lung cancer malignant glioma medulloblastoma atypical teratoid rhabdoid tumor movement disorder osteosarcoma pancreatic intraductal papillary-mucinous neoplasm gastric cancer primitive neuroectodermal tumor spina bifida interstitial cystitis tuberculosis lung carcinoma malignant pancreatic neoplasm oligodendroglioma ovarian cancer dilated cardiomyopathy pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia exocrine pancreatic carcinoma Pick disease gastric carcinoma psoriasis hepatocellular carcinoma
B	: Q96RL7	chorea-acanthocytosis neuroacanthocytosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor astrocytic tumor Chorea Acanthocytosis Syndrome Cohen syndrome glioblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Parkinson disease ulcerative colitis atypical teratoid rhabdoid tumor chorea-acanthocytosis neuroacanthocytosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor astrocytic tumor Chorea Acanthocytosis Syndrome Cohen syndrome glioblastoma malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Parkinson disease ulcerative colitis atypical teratoid rhabdoid tumor colorectal cancer invasive ductal breast carcinoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma breast cancer choreatic disease epilepsy large cell medulloblastoma medulloblastoma neurodegenerative disease

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.