9Y90 | pdb_00009y90

Cryo-EM structure of Broadly neutralizing antibody VRC48.02 in complex with HIV-1 Env BG505 DS-SOSIP trimer

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth J]SCOP2B SuperfamilyVirus ectodomain 8085618 3001628 SCOP2B (2022-06-29)
G [auth C]SCOP2B SuperfamilyVirus ectodomain 8085618 3001628 SCOP2B (2022-06-29)
K [auth H]SCOP2B SuperfamilyVirus ectodomain 8085618 3001628 SCOP2B (2022-06-29)
D [auth K]SCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
H [auth D]SCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
LSCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth F],
E [auth A],
I [auth E]		VRC48.02 Heavy---
B [auth I],
F [auth B],
J [auth G]		VRC48.02 Light---
C [auth J],
G [auth C],
K [auth H]		BG505 SOSIP.664 gp41
D [auth K],
H [auth D],
L		HIV-1 BG505 DS-SOSIP gp120

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth J],
G [auth C],
K [auth H]		IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
C [auth J],
G [auth C],
K [auth H]		IPR036377Gp120 core superfamilyHomologous Superfamily
C [auth J],
G [auth C],
K [auth H]		IPR000328Retroviral envelope protein GP41-likeDomain
C [auth J],
G [auth C],
K [auth H]		IPR037527Envelope glycoprotein Gp160Family
D [auth K],
H [auth D],
L		IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
D [auth K],
H [auth D],
L		IPR036377Gp120 core superfamilyHomologous Superfamily
D [auth K],
H [auth D],
L		IPR000328Retroviral envelope protein GP41-likeDomain
D [auth K],
H [auth D],
L		IPR037527Envelope glycoprotein Gp160Family