9XTT | pdb_00009xtt

Human minor spliceosome branching-completed C complex (after step-I)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth C]U5 small nuclear ribonucleoprotein 200 kDa helicase
H [auth B]116 kDa U5 small nuclear ribonucleoprotein component
G [auth A]Pre-mRNA-processing-splicing factor 8
F [auth 6]U6atac snRNA---
E [auth 5]U5 snRNA---
EB [auth z]Multiple myeloma tumor-associated protein 2 -
DB [auth x]RNA-binding protein 8A
CB [auth w]Protein mago nashi homolog
BB [auth v]Eukaryotic initiation factor 4A-III
AB [auth u]Pre-mRNA-splicing factor SPF27-
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
Pre-mRNA-processing factor 19
OA [auth g],
VA [auth n]
Small nuclear ribonucleoprotein G
NA [auth f],
UA [auth m]
Small nuclear ribonucleoprotein F
D [auth 4]Peptidylprolyl isomerase domain and WD repeat-containing protein 1
MA [auth e],
TA [auth l]
Small nuclear ribonucleoprotein E
LA [auth d],
SA [auth k]
Small nuclear ribonucleoprotein Sm D3
KA [auth c],
RA [auth j]
Small nuclear ribonucleoprotein Sm D2
JA [auth b],
QA [auth i]
Small nuclear ribonucleoprotein Sm D1
IA [auth a],
PA [auth h]
Small nuclear ribonucleoprotein-associated proteins B and B'
HA [auth Z]WD repeat-containing protein 70
GA [auth Y]Splicing factor YJU2
FA [auth X3]Unknown polymer---
EA [auth X2]Unknown polymer---
DA [auth X1]Unknown polymer---
C [auth 2]U12 snRNA---
CA [auth X]Protein FRG1
BA [auth V]Pre-mRNA-splicing factor CWC22 homolog
AA [auth U]Serine/arginine repetitive matrix protein 2
Z [auth T]Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Y [auth S]Pre-mRNA-splicing factor SLU7
X [auth R]Pre-mRNA-splicing factor CWC25 homolog-
W [auth Q]RNA helicase aquarius
V [auth P]Peptidyl-prolyl cis-trans isomerase E
U [auth O]Peptidyl-prolyl cis-trans isomerase-like 1
T [auth N]Spliceosome-associated protein CWC15 homolog
B [auth 1]MSE-U12_Intron---
S [auth M]Armadillo repeat-containing protein 7-
R [auth L]RNA-binding protein 48
Q [auth K]Pleiotropic regulator 1-
P [auth J]SNW domain-containing protein 1
O [auth I]Pre-mRNA-splicing factor ISY1 homolog
N [auth H]Coiled-coil domain-containing protein 12- -
M [auth G]Crooked neck-like protein 1
L [auth F]Pre-mRNA-splicing factor SYF1-
K [auth E]Cell division cycle 5-like protein
J [auth D]U5 small nuclear ribonucleoprotein 40 kDa protein
A [auth 0]MSE-U12_exon---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth C]IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
I [auth C]IPR041094Brr2, N-terminal helicase PWI domainDomain
I [auth C]IPR004179Sec63 domainDomain
I [auth C]IPR014756Immunoglobulin E-setHomologous Superfamily
I [auth C]IPR011545DEAD/DEAH-box helicase domainDomain
I [auth C]IPR057842MER3 helicase-like, winged helix domainDomain
I [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth C]IPR050474Helicase Hel308/SKI2-likeFamily
I [auth C]IPR001650Helicase, C-terminal domain-likeDomain
I [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
I [auth C]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
I [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
I [auth C]IPR035892C2 domain superfamilyHomologous Superfamily
H [auth B]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
H [auth B]IPR000795Translational (tr)-type GTP-binding domainDomain
H [auth B]IPR035647EF-G domain III/V-likeHomologous Superfamily
H [auth B]IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalDomain
H [auth B]IPR041095Elongation Factor G, domain IIDomain
H [auth B]IPR004161Translation elongation factor EFTu-like, domain 2Domain
H [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth B]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth B]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth B]IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalDomain
H [auth B]IPR005225Small GTP-binding domainDomain
H [auth B]IPR000640Elongation factor EFG, domain V-likeDomain
H [auth B]IPR044121Snu114, GTP-binding domainDomain
G [auth A]IPR012984PROCT domainDomain
G [auth A]IPR012591PRO8NT domainDomain
G [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
G [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
G [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
G [auth A]IPR012592PROCN domainDomain
G [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
G [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
G [auth A]IPR021983PRP8 domain IV coreDomain
G [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
G [auth A]IPR037518MPN domainDomain
G [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
G [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
G [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
EB [auth z]IPR039207Multiple myeloma tumor-associated protein 2-likeFamily
EB [auth z]IPR019315Multiple myeloma tumor-associated protein 2-like, N-terminalDomain
DB [auth x]IPR033744RBM8, RNA recognition motifDomain
DB [auth x]IPR000504RNA recognition motif domainDomain
DB [auth x]IPR008111RNA-binding motif protein 8Family
DB [auth x]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DB [auth x]IPR035979RNA-binding domain superfamilyHomologous Superfamily
CB [auth w]IPR004023Mago nashi proteinFamily
CB [auth w]IPR036605Mago nashi superfamilyHomologous Superfamily
BB [auth v]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
BB [auth v]IPR014014RNA helicase, DEAD-box type, Q motifConserved Site
BB [auth v]IPR011545DEAD/DEAH-box helicase domainDomain
BB [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth v]IPR001650Helicase, C-terminal domain-likeDomain
BB [auth v]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
AB [auth u]IPR008409Pre-mRNA-splicing factor SPF27Family
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR038959Prp19Family
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR019775WD40 repeat, conserved siteConserved Site
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR013915Prp19, coiled-coil regionDomain
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR003613U-box domainDomain
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR001680WD40 repeatRepeat
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
IPR055340Pre-mRNA-processing factor 19, U-box domainDomain
OA [auth g],
VA [auth n]
IPR044641Sm-like protein Lsm7/SmGFamily
OA [auth g],
VA [auth n]
IPR034098Small nuclear ribonucleoprotein GFamily
OA [auth g],
VA [auth n]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
OA [auth g],
VA [auth n]
IPR047575Sm domainDomain
OA [auth g],
VA [auth n]
IPR010920LSM domain superfamilyHomologous Superfamily
NA [auth f],
UA [auth m]
IPR016487Sm-like protein Lsm6/SmFFamily
NA [auth f],
UA [auth m]
IPR034100Small nuclear ribonucleoprotein FFamily
NA [auth f],
UA [auth m]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
NA [auth f],
UA [auth m]
IPR047575Sm domainDomain
NA [auth f],
UA [auth m]
IPR010920LSM domain superfamilyHomologous Superfamily
D [auth 4]IPR001680WD40 repeatRepeat
D [auth 4]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
D [auth 4]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
D [auth 4]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
D [auth 4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth 4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth e],
TA [auth l]
IPR027078Small nuclear ribonucleoprotein EFamily
MA [auth e],
TA [auth l]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
MA [auth e],
TA [auth l]
IPR047575Sm domainDomain
MA [auth e],
TA [auth l]
IPR010920LSM domain superfamilyHomologous Superfamily
LA [auth d],
SA [auth k]
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
LA [auth d],
SA [auth k]
IPR034099Small nuclear ribonucleoprotein Sm D3Family
LA [auth d],
SA [auth k]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
LA [auth d],
SA [auth k]
IPR047575Sm domainDomain
LA [auth d],
SA [auth k]
IPR010920LSM domain superfamilyHomologous Superfamily
KA [auth c],
RA [auth j]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
KA [auth c],
RA [auth j]
IPR047575Sm domainDomain
KA [auth c],
RA [auth j]
IPR027248Small nuclear ribonucleoprotein Sm D2Family
KA [auth c],
RA [auth j]
IPR010920LSM domain superfamilyHomologous Superfamily
JA [auth b],
QA [auth i]
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
JA [auth b],
QA [auth i]
IPR034102Small nuclear ribonucleoprotein D1Domain
JA [auth b],
QA [auth i]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
JA [auth b],
QA [auth i]
IPR047575Sm domainDomain
JA [auth b],
QA [auth i]
IPR010920LSM domain superfamilyHomologous Superfamily
IA [auth a],
PA [auth h]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
IA [auth a],
PA [auth h]
IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
IA [auth a],
PA [auth h]
IPR047575Sm domainDomain
IA [auth a],
PA [auth h]
IPR010920LSM domain superfamilyHomologous Superfamily
HA [auth Z]IPR001680WD40 repeatRepeat
HA [auth Z]IPR051858WD repeat-containing GAD-1Family
HA [auth Z]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth Z]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth Y]IPR043701Splicing factor Yju2Family
GA [auth Y]IPR007590Saf4/Yju2 proteinFamily
CA [auth X]IPR008999Actin-crosslinkingHomologous Superfamily
CA [auth X]IPR010414Protein FRG1Family
BA [auth V]IPR050781Pre-mRNA-splicing factor CWC22Family
BA [auth V]IPR016024Armadillo-type foldHomologous Superfamily
BA [auth V]IPR003891Initiation factor eIF-4 gamma, MA3Domain
BA [auth V]IPR003890MIF4G-like, type 3Domain
AA [auth U]IPR047490Serine/arginine repetitive matrix protein 2, cwf21 domainDomain
AA [auth U]IPR013170mRNA splicing factor Cwf21 domainDomain
AA [auth U]IPR024945Spt5 C-terminal domainDomain
AA [auth U]IPR051372Pre-mRNA-splicing factor CWC21Family
Z [auth T]IPR011709DEAD-box helicase, OB foldDomain
Z [auth T]IPR001650Helicase, C-terminal domain-likeDomain
Z [auth T]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
Z [auth T]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
Z [auth T]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
Z [auth T]IPR007502Helicase-associated domainDomain
Z [auth T]IPR011545DEAD/DEAH-box helicase domainDomain
Z [auth T]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth S]IPR021715Pre-mRNA-splicing factor SLU7 domainDomain
Y [auth S]IPR039974Pre-mRNA-splicing factor SLU7Family
X [auth R]IPR019339CBF1-interacting co-repressor CIR, N-terminal domainDomain
X [auth R]IPR051376Pre-mRNA-splicing factor CWC25Family
X [auth R]IPR022209Pre-mRNA splicing factorFamily
W [auth Q]IPR048966RNA helicase aquarius, beta-barrelDomain
W [auth Q]IPR048967RNA helicase aquarius, insertion domainDomain
W [auth Q]IPR041677DNA2/NAM7 helicase, helicase domainDomain
W [auth Q]IPR026300CWF11 familyFamily
W [auth Q]IPR045055DNA2/NAM7-like helicaseFamily
W [auth Q]IPR032174RNA helicase aquarius, N-terminal domainDomain
W [auth Q]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
W [auth Q]IPR047187Upf1-like, C-terminal helicase domainDomain
W [auth Q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
V [auth P]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
V [auth P]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
V [auth P]IPR034168Peptidyl-prolyl cis-trans isomerase E, RNA recognition motifDomain
V [auth P]IPR016304Peptidyl-prolyl cis-trans isomerase EFamily
V [auth P]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
V [auth P]IPR000504RNA recognition motif domainDomain
V [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
V [auth P]IPR035979RNA-binding domain superfamilyHomologous Superfamily
U [auth O]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
U [auth O]IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomeraseFamily
U [auth O]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
U [auth O]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
U [auth O]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
T [auth N]IPR006973Pre-mRNA-splicing factor Cwf15/Cwc15Family
S [auth M]IPR011989Armadillo-like helicalHomologous Superfamily
S [auth M]IPR016024Armadillo-type foldHomologous Superfamily
S [auth M]IPR042462Armadillo repeat-containing protein 7Family
S [auth M]IPR000225ArmadilloRepeat
R [auth L]IPR034264RBM48, RNA recognition motifDomain
R [auth L]IPR039599RNA-binding protein 48Family
R [auth L]IPR035979RNA-binding domain superfamilyHomologous Superfamily
R [auth L]IPR060699RNA-binding protein 48, helix domainDomain
Q [auth K]IPR019775WD40 repeat, conserved siteConserved Site
Q [auth K]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Q [auth K]IPR045241WD repeat Prp46/PLRG1-likeFamily
Q [auth K]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
Q [auth K]IPR001680WD40 repeatRepeat
Q [auth K]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth J]IPR017862SKI-interacting protein, SKIPFamily
P [auth J]IPR004015SKI-interacting protein SKIP, SNW domainDomain
O [auth I]IPR029012Helix hairpin bin domain superfamilyHomologous Superfamily
O [auth I]IPR009360Pre-mRNA-splicing factor Isy1Family
O [auth I]IPR037200Pre-mRNA-splicing factor Isy1 superfamilyHomologous Superfamily
N [auth H]IPR013169mRNA splicing factor Cwf18-likeFamily
M [auth G]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
M [auth G]IPR055430Pre-mRNA-splicing factor Syf1/CRNKL1-like, C-terminal HAT-repeats domainDomain
M [auth G]IPR003107HAT (Half-A-TPR) repeatRepeat
M [auth G]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
L [auth F]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
L [auth F]IPR055430Pre-mRNA-splicing factor Syf1/CRNKL1-like, C-terminal HAT-repeats domainDomain
L [auth F]IPR003107HAT (Half-A-TPR) repeatRepeat
L [auth F]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
L [auth F]IPR056350Pre-mRNA-splicing factor SYF1, central HAT repeats domainDomain
L [auth F]IPR019734Tetratricopeptide repeatRepeat
L [auth F]IPR055433Pre-mRNA-splicing factor Syf1-like, N-terminal HAT-repeats domainDomain
K [auth E]IPR009057Homeodomain-like superfamilyHomologous Superfamily
K [auth E]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
K [auth E]IPR017930Myb domainDomain
K [auth E]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
K [auth E]IPR001005SANT/Myb domainDomain
K [auth E]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain
J [auth D]IPR052234U5 snRNP Complex ComponentFamily
J [auth D]IPR019775WD40 repeat, conserved siteConserved Site
J [auth D]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
J [auth D]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
J [auth D]IPR001680WD40 repeatRepeat
J [auth D]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
J [auth D]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth C]O75643
H [auth B]Q15029
G [auth A]Q6P2Q9
EB [auth z]Q9BU76
DB [auth x]Q9Y5S9
CB [auth w]P61326
BB [auth v]P38919
AB [auth u]O75934
WA [auth q],
XA [auth r],
YA [auth s],
ZA [auth t]
Q9UMS4
OA [auth g],
VA [auth n]
P62308
NA [auth f],
UA [auth m]
P62306
D [auth 4]Q96BP3
MA [auth e],
TA [auth l]
P62304
LA [auth d],
SA [auth k]
P62318
KA [auth c],
RA [auth j]
P62316
JA [auth b],
QA [auth i]
P62314
IA [auth a],
PA [auth h]
P14678
HA [auth Z]Q9NW82
GA [auth Y]Q9BW85
CA [auth X]Q14331
BA [auth V]Q9HCG8
AA [auth U]Q9UQ35
Z [auth T]Q92620
Y [auth S]O95391
X [auth R]Q9NXE8
W [auth Q]O60306
V [auth P]Q9UNP9
U [auth O]Q9Y3C6
T [auth N]Q9P013
S [auth M]Q9H6L4
R [auth L]Q5RL73
Q [auth K]O43660
P [auth J]Q13573
N [auth H]Q8WUD4
M [auth G]Q9BZJ0
L [auth F]Q9HCS7
K [auth E]Q99459
J [auth D]Q96DI7

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
F [auth 6]G5J
FA [auth X3]UNK
EA [auth X2]UNK
DA [auth X1]UNK
P [auth J]SEP Parent Component: SER

AA0037

:  O-phospho-L-serine MOD:00046